| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_0911 |
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| Symbol | |
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| ID | 8018543 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012856 |
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| Strand | + |
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| Start bp | 957853 |
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| End bp | 961008 |
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| Gene Length | 3156 bp |
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| Protein Length | 1051 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644829690 |
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| Product | transporter, hydrophobe/amphiphile efflux-1 (HAE1) family |
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| Protein accession | YP_002980883 |
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| Protein GI | 241662523 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCGCT TCTTTATCGA CCGCCCGGTC TTTGCCTGGG TGATTGCGCT GGCCATCATC
CTGGCCGGCG TGCTCGCGCT GCCCAAACTG CCCGTGGCGC AGTATCCGAA CATCGCGCCG
CCCAACGTCA GCATCTCGGC CAACTACCCA GGCGCGTCCG CGCGCACGGT GGAGAGTGCC
GTCACCGCCA TCATCGAGCG CGAGATGAAC GGTGCGCCGG GGCTGCTGTA CATGTCGTCG
TCGTCCGATG CGGCGGGCAA CGTGTCGATC AACCTGTCGT TCACGCAGGG GACGAGCCCG
GATCTTGCGG CGGTGGAGGT GCAGAACCGG CTGAAGATCG TCGAGGAGCG CCTGCCTGAA
GTCGTGCGCC GCAACGGCAT CCGCATCGAG AAGGCGGCCG AGAACTACAT GATGTATCTG
TCGCTGTCGG CCGAGCGCGG CCGCTTTGAC GGCATCGACC TGGGTGACCT CGCTTCGTCT
GATTTGATTC CGCAGTTGCG CCGCGTGCCG GGCGTGGGCA CCGCGCAGTT GTTCGATGCG
GAATACGCCA TGCGCATCTG GCCCGATGCC GACAAGCTGA CCGCATCGGG CCTCACCGCC
GGTGACTTGA GCGATGCCGT GCGCCGGTAC AACGCGCGCA TCACTGTGGG TGAGATCGGC
AGCGGCGCCG TGCCGGGCAG CGCGCCCATC AACGCGAGCG TCACCGGGGA CGACGGGTTG
ACTACGCCTG AAGCATTCGG CCAGATCCCG CTGCGTGCGG ACGCGCAGGG CCGCGTGGTG
CTGCTGCGCG ATGTGGCGCG CGTGGAGCTG GGCGGCAGCG ATTACCTGTA CCTCTCGCGC
ATGAACGGCA AGCCGGCCAC GACCATCGGT ATCAAGCTGG CGCCGGGTGC CAACGCCGTG
GGCGTCGCCA AGCGCGTGCG CGCGGTGCTG GACCAAGCGC AGGCGCAATT CCCGCCGGGT
GTGCGCTATG AGGTGGCGTA CGACAGCTCG CGCTTTGTCG GCATCGCCAT CGAGCAGGTG
GTCAAGACGC TGCTCGAAGC CGTGGTGCTG GTGTTCCTGG TGATGATGCT GTTCATGCAG
AACCTGCGCG CGACGCTCAT CCCGACGCTG GTGGTGCCGA TCGCGCTGCT GGGTACGTTC
GCGGTGATGC TGCCCATGGG TTTCTCCATC AACGTGCTGA CGCTGTTCGG CCTGGTGCTC
GCCATCGGCA TCCTTGTCGA CGATGCCATC GTGGTGGTGG AAAACGTCGA ACGCGTGATG
CACGAAGAAG GGCTCTCGCC GCGCGAGGCA ACGGCCAAGG CGATGCGGCA GATCAGCGGT
GCGATTGTCG GCATCTCGCT GGTGCTGACG GCAGTGTTCG TGCCGATGGC GTTCTTTGGC
GGCGCGGTAG GCAACATTTA CCGGCAGTTT TCGCTGTCGC TTGCCGTGTC GATGGTGTTC
TCGGCATTCC TGGCATTGAC GCTCACGCCG GCGCTTTGCG CGACGCTGCT CAAGCCGGTG
CAGGCGGACC ACGGCGCCGA GCGCAAGGGC TTCTTCGGCG CATTCAACCG GGGCTTTGCG
CGGTTGACGG CACGCTACCG GGGCGGCGTC GCCATGCTGC TGAATCGCAC GGGCCGTGCA
CTGGTGGCAT ACGGCGCGGT TATCGGCGTG GTCGTGCTGC TGTTCATGCA ACTGCCGACG
GCCTTTCTGC CGGAGGAAGA TACCGGTGAG TTCATGACCG TCGTCATGCT GCCGACCGGC
GCCACACAGG CGCAGACGCT CGACGTCGTT CGGCAGGCAG AGCAGTACTT CATGACGCAG
GAACCGGCCG TGGCGTCTAC GCTCGCCATC ACGGGGTTCA GCTTGTACGG CAACGGCCAG
AACGCGGCCA TGCTGTTCCT GACGCTCAAG GACTGGAAGC AGCGCAAGGG TGCTGGCCAG
CATGTCGATG CCGTGGTCGA GCGCGCCAAC GCGGCATTCG GCAAGATCAA GGGCGCGATG
GTCATGGCGA TGAACTCGCC GGCTCTGCCG GAACTGGGCA GCAAGCCGGG GTTCGACCTG
CGCTTGCAAG ACCGCGGCGG TGCCGGCTAC GAGCGCCTCG CGCAGGCACG CGACCACATG
CTTGCCGAGG CGGCGAAGCA TCCTGCGCTA TCGGAAGTCA CGTTTGCAGG CCAGGGCGAT
GCGCCGCAGG TTCTGATCGA TGTGGACCGC AAGAAAGCCC TGGCGATGGG TGTATCGATC
GAAGACATCA ACCGCACGCT GGCCGTAATG TTCGGCTCCG ACTACGCCGG CGATTTCGTC
TACCGCAACC AGGTGCGCCG CGTGATCGTG CAGGCCGACG GCAAGCAGCG GGTTTCGGTC
GAGCAGCTTG GCCGCATGCA CGTGCGCAAT GCAGCAGGGG CCATGGTGCC GCTTTCCGCA
TTCACCACCA CCAAGTGGAT CGTCGGGCCG CTCAAGCTCG ATCGCTACAA CGGCTTTCCG
GCCATGACGA TCACCGGCTC GCCTGCACCC GGTCACAGCT CGGGCGAGGC CATGGCGGCG
ATGGAGTCGA TCGCGCGCGG TCTGCCTGCA GGCTTCGGCT ACGAGTGGAC GGGGCAGTCG
TTCGAGGAGC GGCTGTCGGG CGCGCAGGCG CCGGCGCTGT TTGCGTTGTC GATCCTCGTC
GTGTTCCTGT GCCTGGCCGC GCTGTACGAG AGCTGGTCAA TTCCGCTGGC GGTCTTGCTG
GTGGTGCCGC TCGGCGTGCT GGGCGCGCTG CTGGGCGCCA CGCTGCGCTT TCTGCCCAAC
GACATCTACT TCAAAGTCGG GCTGATTGCG ACCATCGGCC TGTCGGCCAA GAACGCGATC
CTGATCATCG AGGTGGCCAA GGATCTGGTG GCGCAAGGCA TGGGCTTGAT TGAAGCCACG
CTGGAAGCTG CGCGGCTGCG GTTCCGGCCG ATCGTGATGA CGTCGCTCGC GTTTGCGTTT
GGCGTCGTGC CACTGGCGCT TGCAAGCGGC GCGGCATCGG CCAGCCAGCG CGCTATCGGC
ACGGGCGTGC TAGGCGGGAT CATCGCTGCA ACGGTGCTGG CGGTGTTCCT GGTGCCGGTG
TTCTTTGTGG TGGTGCGGCG CGTGTTCAAG GGCAGCGAGC GGCAGCGCCG GCTGGACGCG
GCGCACGAGC ACGAGACGGC CGGGCCGGCC GCCTGA
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| Protein sequence | MARFFIDRPV FAWVIALAII LAGVLALPKL PVAQYPNIAP PNVSISANYP GASARTVESA
VTAIIEREMN GAPGLLYMSS SSDAAGNVSI NLSFTQGTSP DLAAVEVQNR LKIVEERLPE
VVRRNGIRIE KAAENYMMYL SLSAERGRFD GIDLGDLASS DLIPQLRRVP GVGTAQLFDA
EYAMRIWPDA DKLTASGLTA GDLSDAVRRY NARITVGEIG SGAVPGSAPI NASVTGDDGL
TTPEAFGQIP LRADAQGRVV LLRDVARVEL GGSDYLYLSR MNGKPATTIG IKLAPGANAV
GVAKRVRAVL DQAQAQFPPG VRYEVAYDSS RFVGIAIEQV VKTLLEAVVL VFLVMMLFMQ
NLRATLIPTL VVPIALLGTF AVMLPMGFSI NVLTLFGLVL AIGILVDDAI VVVENVERVM
HEEGLSPREA TAKAMRQISG AIVGISLVLT AVFVPMAFFG GAVGNIYRQF SLSLAVSMVF
SAFLALTLTP ALCATLLKPV QADHGAERKG FFGAFNRGFA RLTARYRGGV AMLLNRTGRA
LVAYGAVIGV VVLLFMQLPT AFLPEEDTGE FMTVVMLPTG ATQAQTLDVV RQAEQYFMTQ
EPAVASTLAI TGFSLYGNGQ NAAMLFLTLK DWKQRKGAGQ HVDAVVERAN AAFGKIKGAM
VMAMNSPALP ELGSKPGFDL RLQDRGGAGY ERLAQARDHM LAEAAKHPAL SEVTFAGQGD
APQVLIDVDR KKALAMGVSI EDINRTLAVM FGSDYAGDFV YRNQVRRVIV QADGKQRVSV
EQLGRMHVRN AAGAMVPLSA FTTTKWIVGP LKLDRYNGFP AMTITGSPAP GHSSGEAMAA
MESIARGLPA GFGYEWTGQS FEERLSGAQA PALFALSILV VFLCLAALYE SWSIPLAVLL
VVPLGVLGAL LGATLRFLPN DIYFKVGLIA TIGLSAKNAI LIIEVAKDLV AQGMGLIEAT
LEAARLRFRP IVMTSLAFAF GVVPLALASG AASASQRAIG TGVLGGIIAA TVLAVFLVPV
FFVVVRRVFK GSERQRRLDA AHEHETAGPA A
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