Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_0859 |
Symbol | |
ID | 8018490 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012856 |
Strand | - |
Start bp | 900213 |
End bp | 901337 |
Gene Length | 1125 bp |
Protein Length | 374 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 644829638 |
Product | lytic murein transglycosylase B |
Protein accession | YP_002980832 |
Protein GI | 241662472 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2951] Membrane-bound lytic murein transglycosylase B |
TIGRFAM ID | [TIGR02282] lytic murein transglycosylase B |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCCAAT CGCTTTCTTC CCGTCGTCCC GTATTGCGCG CCCTGGTGGC TGGCGCAGCG CTCTCCGCAC TCTCTTTCCC GGCGCTCTCG CTGGCGGCCA AGAAGGCCGC CAAATCGTCC AAGCGCCGCG TCGCGGTGCA TGAAGAAGAG ATTGATCTCG ATCGTTATCG CAACAACCCG CAGACGCAGG CCTTCATCGG CATGCTGGTC GCGCAGTACA ACTTTGACCG GACATCGCTC GATACGCTGT TTGCGGGCAC AGCCTATTCC GCCACGGTGG CGCGCTTGAT CCTGCCGCCG GCCACACCCG CGCGTCGCAG CTGGACGGCC TATCGCGGCC GCTTCATTGA GCCGATCCGC ATCGGCGCAG GCGTGCGGTT CTGGCAGCAA TACGGCGACA CACTGCGCCG CGCCGAGAAC GAATTCGGCG TGCCGGCCGA TGTGATCGTG GGCATCCTTG GCGTGGAGAC CATCTACGGC CGGGACATGG GCAACTTCCG CGTGATTGAC GCGCTGTCCA CGCTGGCTTT CGACTACCCC GACACGCCCA ACCGCGAAGA CCGCAGCACG ATGTTCCGCA ATCAGTTGAA GGACTTCCTG CTCTGGTGCC GCGACACGGG CACGGACACG TTCTCGGTCC TGGGCTCGTA TGCGGGCGCA GTGGGCATTC CGCAGTTCAT GCCGACCAGC ATTCGCGAAT ACGCCATCGA TTACGATCGC GACGGCCACA TCGATCTGCG CAACAGCGCG GTGGATGCCA TTGGCAGCGT TGCCCGCTTC CTGCAAATGC ATGGCTGGGA GCCGAACCGC CCCGTGATGT GGAACATTGC CGGCGATGCC GATAGCCAGG GCATTGCGGC CGCCGCCGCA GATGGCCAGC CGTATCCCGG CATGACGTTG TCCAGGCTCA CACGCGCTGG TCTGGCATTG GCTCCGGGTG TGGATACCGC ACGCGAGCAG GAAACCGAAG TGCTGATGAT CGATCTGCCC ACGCCCGGCC AGCCGACCGA ATACCGCGTC GGCCTGCGTA ACTTCTACGT GCTCACGCGC TACAACCGCA GCTTCTTCTA TGCGGCGGCG GTGTACGAGT TGGGCCAGGC CGTGCGGCAG GCGATGCAGG GTTGA
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Protein sequence | MSQSLSSRRP VLRALVAGAA LSALSFPALS LAAKKAAKSS KRRVAVHEEE IDLDRYRNNP QTQAFIGMLV AQYNFDRTSL DTLFAGTAYS ATVARLILPP ATPARRSWTA YRGRFIEPIR IGAGVRFWQQ YGDTLRRAEN EFGVPADVIV GILGVETIYG RDMGNFRVID ALSTLAFDYP DTPNREDRST MFRNQLKDFL LWCRDTGTDT FSVLGSYAGA VGIPQFMPTS IREYAIDYDR DGHIDLRNSA VDAIGSVARF LQMHGWEPNR PVMWNIAGDA DSQGIAAAAA DGQPYPGMTL SRLTRAGLAL APGVDTAREQ ETEVLMIDLP TPGQPTEYRV GLRNFYVLTR YNRSFFYAAA VYELGQAVRQ AMQG
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