Gene Rpic12D_0820 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_0820 
Symbol 
ID8018450 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp853954 
End bp854862 
Gene Length909 bp 
Protein Length302 aa 
Translation table11 
GC content67% 
IMG OID644829599 
Producttranscriptional regulator, LysR family 
Protein accessionYP_002980793 
Protein GI241662433 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.378943 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.194336 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATCTGT CCTCGCTCGA GATCTTCCGC GCTGTCGTGC GCGAAGGCGG CGTCACGCGG 
GCGGCGCAGC AGCTCAATCG CGTGCAGTCG AATGTGACGA CCCGCATCCG ACAGCTGGAG
ACTTCGCTCG GCGTGCAACT CTTCGTACGT GAGAGCAAGC GCATGGTGCT CACGCCCGCC
GGACAGACCC TGCTGACCTA CGCCGACGAC ATCCTCCGCC TGGCCGCCGA AGCGCGCCAG
GCCGTGCAGC CGCGCGAGCC GCACGGGCGC CTGCGCATCG CCTCGATGGA AAGCACGGCG
GCCAGCCGCC TTCCTGCTCT ACTGGCCACG CTGCATCAAC GCTGGCCGCG CGTGCAGCTC
GAACTGGTGA CGATGACCAC GCGCCACTCA CTCCAGGCGC TATCGAACTT TGAAGTCGAT
TGCGCGTTCG TTGCCGAAAC CGCGTGCTCG AACAACCGGC GCGCCGCCAT GACAACGCTG
CCGGCTTTCT CGGAAGAACT GGTACTGATT GCCCACCGCG CCCATCCACC GATCCGCCGC
GCGGCGGACG TGCAGACTGC CGGCATGCTC GCGTTCGAAC CTGGCTGCGC CTATCGGCAA
TTGATCGAAG ACTGGTTCGC CGCAGACGGC GTGGTGCCGT CCCGCGTGCT GGAGCTTGGC
TCCTACCACG CCATCATCGC GTGCGCGGCC GCCGGCATTG GTGTGGCGCT GGTGCCTCGC
TCGGTGCTCG AGCTATATAC GAATGCGCCA GAAATCAGCA TCCACACGCT AGGCAAGCCG
GGCCGTGTCG ACACGCTGCT CGCCTGGCAC CGCGACATGG CTGGCCCTGC CCTGCAGGCG
CTCGTTCAGG TGCTGAGCGA GCCGCAGCCG GCGGCAAGCG CCACCCCACA CGAGGCGATT
GCTGCCTAA
 
Protein sequence
MDLSSLEIFR AVVREGGVTR AAQQLNRVQS NVTTRIRQLE TSLGVQLFVR ESKRMVLTPA 
GQTLLTYADD ILRLAAEARQ AVQPREPHGR LRIASMESTA ASRLPALLAT LHQRWPRVQL
ELVTMTTRHS LQALSNFEVD CAFVAETACS NNRRAAMTTL PAFSEELVLI AHRAHPPIRR
AADVQTAGML AFEPGCAYRQ LIEDWFAADG VVPSRVLELG SYHAIIACAA AGIGVALVPR
SVLELYTNAP EISIHTLGKP GRVDTLLAWH RDMAGPALQA LVQVLSEPQP AASATPHEAI
AA