| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_0729 |
|---|
| Symbol | |
|---|
| ID | 8018356 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | + |
|---|
| Start bp | 761276 |
|---|
| End bp | 761797 |
|---|
| Gene Length | 522 bp |
|---|
| Protein Length | 173 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644829505 |
|---|
| Product | peptidoglycan-associated lipoprotein |
|---|
| Protein accession | YP_002980702 |
|---|
| Protein GI | 241662342 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
|---|
| TIGRFAM ID | [TIGR02802] peptidoglycan-associated lipoprotein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0152345 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.212711 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGAAGT CCCAAACCAT GATCAAACTC GCAGCCATTG CCGCGCTGCT GGCCCTGGGC
GCTTGCAGCT CGGGCGTGAA GCTGGACGAT ACGGCCAAGA ACGGTACGGG CGGTGCCGCC
GGCACGGGTG CGGATGCCCG CACGGTGACC CCGGTGGACG TGGGCCGCGA CGAGCTGACC
GACCCGAACA GCCCGCTGGC CAAGCGCAGC ATCTACTTCG ATTTCGACAG CTACTCGGTC
AAGCCGGAGT ACCAAGGCCT GCTGGGTCAG CACTCGCGCT ACCTGCAATC GCACAATCAG
CGCAAGGTCC TGATCCAGGG CAACACCGAC GAGCGCGGCA CGAGCGAATA CAACCTCGCA
CTGGGCCAGA AGCGTGCCGA GGCCGTGCGT CGCGCCCTGT CGTCGATGGG CGTGCCTGAC
AGCCAGATGG AAGCCGTGAG CCTGGGTAAG GAAAAGCCGC AAGCGACCGG CCACGACGAA
GACTCGTGGG CACAGAACCG CCGCGCCGAC ATCGTCTATT AA
|
|---|
| Protein sequence | MSKSQTMIKL AAIAALLALG ACSSGVKLDD TAKNGTGGAA GTGADARTVT PVDVGRDELT
DPNSPLAKRS IYFDFDSYSV KPEYQGLLGQ HSRYLQSHNQ RKVLIQGNTD ERGTSEYNLA
LGQKRAEAVR RALSSMGVPD SQMEAVSLGK EKPQATGHDE DSWAQNRRAD IVY
|
|---|
| |