Gene Rpic12D_0604 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_0604 
Symbol 
ID8018230 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp639966 
End bp641402 
Gene Length1437 bp 
Protein Length478 aa 
Translation table11 
GC content65% 
IMG OID644829383 
Producttype I secretion outer membrane protein, TolC family 
Protein accessionYP_002980581 
Protein GI241662221 
COG category[U] Intracellular trafficking, secretion, and vesicular transport
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01844] type I secretion outer membrane protein, TolC family 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.836386 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCGCGC GCGGTTCGCT TGTTGTGCTG TGCTGTTCGA TGATGCCGAT GTTCTCGTGG 
GCGCAGTCCC CACCGAACAC GGCCGCTGCA ACCGACCTCC TCTCCGCCTA CCGCGCTGCG
CTGGCGAACG ATCCGCAATT CGCATCGGCG CGCGCCCAGT CGCTGGCGCA ACGCGAGAAG
CTCACCCAAG GCCGCGCCGG TCTGCTGCCG CAAATTGGCG GCGCCTGGAG TTCCACGCGC
ATCATCTTCG ATCAAAACGC CCCGGCTGAA TTCAATAAGA CGTTCTCTTC GACGGGCTGG
ACGCTGTCAC TGTCGCAGCC GCTCTTCCGC TGGGACCGGT GGGAAACCTA CAAGCAAGGC
GAAATCGCTG CGCAGGCCGC CGAGGCTTCG CTGGCGCAGG CGCAGCTCGA CCTGATCACG
CGCACGGCGC AGGCCTACTT TGATGTGCTC AACGCCCAGG ACACGCTGCA GCTCGCCACC
GCGCAGCGCG ATGCGATCCA GCAGCAATAC GAACAGGCGC GCCGCAACTT CGACGTCGGC
AACGCCAACA TCACCGACGC GAACGATGCG CAGGCACGCC GCGACGCGAT CGACGCCAGC
GTCATCGCCG CACGCAGCGA CTTCGAGATC AAGCAATCAG CGCTCAAGCA GATCATCGGC
GAACCCGTTG GCACGCTGGC CGGCGTGCGC CCAGGCGTCA CGATCCCCCA GCCGGAGCCC
GCTTCAGCAG AACCTTGGGT GGACCAGGCG CGCAGCAGCA ACCTGCAGGT GGCACTGGCG
CAATACAACC TGCAAAGTGC AGAGCGCGAC GTGAAGAAGG CCACTGCGGG CCACCTGCCT
TCGGTTGACC TCGTGGCGCA GACCGGCCAC ACCAATGCCA GCGGCAACCA ATACCTGCCG
TCGCTGCCGG GCGGCGCGCG CTTCGACAGT TCACAGATTG GCGTGCAGGT GTCGATCCCG
ATCTTTGCGG GCGGTGCGAT CCAGTCGCGC GTGCGTGAAA ACATCGCGCT GGAAACCAAG
GCCGCAAACG ATCTTGAGTT CGCCCGCCGT TCTGCCGAAC AAGGTGCGCG GCAAGCCTAT
ATCGGCGTCA TTGCCGGACT TGCGCAGGTG AAAGCGCTGG AAGCGGCCGA GCTGTCGGCG
CGCACGGCGT ACGACTCCAA TCAGCTCGCC TACGGTGTGG GCGTACGCAT CGGCACCGAT
GTGCTGAATT CGCAGGCGCA GCTCTTTCAG GCACGCCGCG ATCTGGCCCG CGCGCGTTAC
GACACCATCG TCAACGGGCT ACGACTGAAG TCCGCCGCCG GCTCGCTGAC CGAGGCAGAC
GTGATCCAGG TGAACACGCT GCTCACGGCC AACGGCTCGA GCGATATCAC CGCGTTGCCG
CCGCCAAGCG CCAAACCCGA ATCGGCGAAA CCTGCCGGCA AATCCGCCAA ACGCTGA
 
Protein sequence
MAARGSLVVL CCSMMPMFSW AQSPPNTAAA TDLLSAYRAA LANDPQFASA RAQSLAQREK 
LTQGRAGLLP QIGGAWSSTR IIFDQNAPAE FNKTFSSTGW TLSLSQPLFR WDRWETYKQG
EIAAQAAEAS LAQAQLDLIT RTAQAYFDVL NAQDTLQLAT AQRDAIQQQY EQARRNFDVG
NANITDANDA QARRDAIDAS VIAARSDFEI KQSALKQIIG EPVGTLAGVR PGVTIPQPEP
ASAEPWVDQA RSSNLQVALA QYNLQSAERD VKKATAGHLP SVDLVAQTGH TNASGNQYLP
SLPGGARFDS SQIGVQVSIP IFAGGAIQSR VRENIALETK AANDLEFARR SAEQGARQAY
IGVIAGLAQV KALEAAELSA RTAYDSNQLA YGVGVRIGTD VLNSQAQLFQ ARRDLARARY
DTIVNGLRLK SAAGSLTEAD VIQVNTLLTA NGSSDITALP PPSAKPESAK PAGKSAKR