| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_0545 |
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| Symbol | |
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| ID | 8018171 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012856 |
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| Strand | - |
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| Start bp | 576660 |
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| End bp | 578024 |
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| Gene Length | 1365 bp |
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| Protein Length | 454 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 644829324 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_002980522 |
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| Protein GI | 241662162 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.732692 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCCTGC GAGAACAACT CTTCCAGCAA GCCGGCGAAG CCCTGCCACA GCGCGTTGCA
CAAGCGAATG GCGCCAGCAT GCCGGCCAGC CCCGCCTATC AGCAAGTCGC AATGGACGTC
CACCAGATCA TCATCGACCG CGTGGAGCTG GGCCGTCTGC AGCAACTCGC ACCCGATCAG
ATCAAGCGTG AGCTGGCCCA ACTGGTGGAG CGCATCGTCG ACGAAGGCAA GCATCAACTC
AACGAGGCCG AGCGCCGCCG CCTGGTGAAC GACGTACAGG ACGAGATGCT CGGCTATGGC
CCGCTCGAAA CGTTGCTGGC AGACCCCACC GTCTCCGACA TCCTCGTCAA CACGTACAAG
CGCGTCTATG TGGAGCGGCG CGGCAAGCTC GAGCTGACCA GTGTGACGTT TCTCGACGAT
GCGCATCTGA TGCGCGTGAT CGAGAAAATG GTATCGAGAG TCGGACGCCG CATCGACGAG
TCAAGCCCGA TGGTGGATGC GCGCCTGCCT GATGGGTCCC GTATCAACGC CATCATTCCG
CCTTCTGCAA TCGACGGCCC GTTGCTGTCG ATCAGGCGCT TTGCGGTGAA TCCGCTGACG
ATTGATGATC TCGTCGGCTT CAACACGCTC ACGCCAGCCA TGGCGCAGTT GATCGATGCA
ATGGTCAAGG CCAAGCTGAA CATCCTGATT TCGGGCGGCA CGGGCAGCGG CAAGACCACG
CTGCTGAACA TTCTCTCGGG CTACATCCCG CCGGACGAGC GCATCGTCAC CATTGAAGAC
GCGGCTGAAC TGCAACTGCG TCAGAACCAC GTGCTGCGTC TGGAAACACG CCCGGCCAAC
ATCGAAGGCC GTGGTGAGAT CACACAGCGC GCCCTGGTGA AGAACGCGCT GCGCATGCGC
CCCGACCGCA TCATCCTGGG CGAGGTACGC GGCGCGGAGG CGCTCGACAT GCTGCACGCG
ATGAACACCG GACATGAGGG GTCGCTCGCC ACCATCCATG CCAACACACC GCGTGATGCA
CTCACCCGCC TGGAAAACAT GATCAGCATG GCAGGAATGC AACTGCCACC GCGCACGATG
CGGCAGCAGA TCACCTCTGC ACTCACGGTG GTGTTGCAGG TCTCGCGCCT GACCGACGGT
TTTCGCAAGC TCATGAGCGT GCAGGAGATC ACCGGCATGG AAGGCGAGGT GGTGAACATG
CAGGAGATCT TCGCCTTCCG CCGCAAAGGC ATTGACCAGG ACGGACGCAT CCGTGGTCAC
TTTTGCGCCA CCGGCGTGCG GCCCAAGTTT TCGGAACGCC TGAAGATGTT CGGCATCCAG
CTGCCGGAAA CGCTCTACGA CCCAGCCGTT CTGCACGAAA TCTGA
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| Protein sequence | MSLREQLFQQ AGEALPQRVA QANGASMPAS PAYQQVAMDV HQIIIDRVEL GRLQQLAPDQ
IKRELAQLVE RIVDEGKHQL NEAERRRLVN DVQDEMLGYG PLETLLADPT VSDILVNTYK
RVYVERRGKL ELTSVTFLDD AHLMRVIEKM VSRVGRRIDE SSPMVDARLP DGSRINAIIP
PSAIDGPLLS IRRFAVNPLT IDDLVGFNTL TPAMAQLIDA MVKAKLNILI SGGTGSGKTT
LLNILSGYIP PDERIVTIED AAELQLRQNH VLRLETRPAN IEGRGEITQR ALVKNALRMR
PDRIILGEVR GAEALDMLHA MNTGHEGSLA TIHANTPRDA LTRLENMISM AGMQLPPRTM
RQQITSALTV VLQVSRLTDG FRKLMSVQEI TGMEGEVVNM QEIFAFRRKG IDQDGRIRGH
FCATGVRPKF SERLKMFGIQ LPETLYDPAV LHEI
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