| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_0490 |
|---|
| Symbol | |
|---|
| ID | 8018116 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | + |
|---|
| Start bp | 516912 |
|---|
| End bp | 518063 |
|---|
| Gene Length | 1152 bp |
|---|
| Protein Length | 383 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644829270 |
|---|
| Product | major facilitator superfamily MFS_1 |
|---|
| Protein accession | YP_002980468 |
|---|
| Protein GI | 241662108 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0738] Fucose permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.300495 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCGCCCC GGCGGCTTCC CTTGTCGGCC CGCGCGGCGA CGATGGCGCT CTTTTTCGCC
AACGGTGCAA CGTTTGCGAC GTGGGGCATT CACATTCCTA CCGTGAAGGC GCGCTTCGGG
TTGTCCGAGG CATCGCTGTC TCTGGCGATG TTCATGGTGG CCGCGGGCGC CATCGTCGCG
ATGAAGTTCG CGGGCCAGTG GGCGGCGCGC GTCGGCACGC GGCGCGCAAG CGTGCAGGGC
GGCGTGGCAT TTGGCGTGAT GACCGCGCTC ATCATGCTGA TGCCGACCTA CCCGGCACTG
CTGGCGGTAC TGCTGCTGTT CGGCATCACG AACGCCGGCT TCGATGTCGC CATGAACGCG
CAAGCGGCCA CGGTCGAGGC CAATCATCAC AAGCCGATCA TCTCGTCGCT GCACGGCATG
TTCAGCCTGG GCGGCATGGC AGGAGCGGCC GTGGGCGGCG TGCTGCTGGA ACTGGGCGTG
CCACCGGCCG TGCATTGCGG CGGCATGGCG CTCGTCACCA TGGCGGCGGC GCTGTGTGCC
GGCCCGTTCA TGCTGCCCGA TCACATGCAC GCAGAAGGCG AATCGGCACA TCCGACCACG
GGGCGCACAC TGTTCCTGCT GGGCGTGCTG GCCTTCCTGG GGCTGGTAGG CGAAGGCGCG
ATGTACGACT GGACGACCGT ATACATGCGC GAGATCGCGC AATCGCCCGA AGCCATTGCC
AGCGCCGGGT ACGCCGCGTT TTCGGGCGGG ATGGCGCTGG CGCGTTTTGG CGGCGATTTC
GCACGCGGGC GCTGGGGAAA CATGCGTGTG CTTGGCGCCA GTGGCGTGCT GGCAACGGGT
GGGATCCTGC TTGCCCTGTT GTGGCCCGCG CCGATGGCTG TCTTGACAGG CTTTGCGTTG
ATGGGCGTGG GCGCCGCCAA CATGGTGCCG ATCTTCTTCA TCACCGCGTC GCGTCTGCCT
GGCGTGCCGG CAGCCGAAGG CATCGCCGCC GTAGCGCGCT TTGCCTACGT GGGCTTGCTG
ATCGGTCCGG TCATCATCGG GTTGATTGCG CATCGCTCCG ACCTGCGCTG GGGGCTGTCG
GTGGTGGCGC TCACCATGGC GATGATCGCG TTGGCGGGGC CCCGGGCGAT CCGCCTGCCG
GAACATCGCT GA
|
|---|
| Protein sequence | MPPRRLPLSA RAATMALFFA NGATFATWGI HIPTVKARFG LSEASLSLAM FMVAAGAIVA
MKFAGQWAAR VGTRRASVQG GVAFGVMTAL IMLMPTYPAL LAVLLLFGIT NAGFDVAMNA
QAATVEANHH KPIISSLHGM FSLGGMAGAA VGGVLLELGV PPAVHCGGMA LVTMAAALCA
GPFMLPDHMH AEGESAHPTT GRTLFLLGVL AFLGLVGEGA MYDWTTVYMR EIAQSPEAIA
SAGYAAFSGG MALARFGGDF ARGRWGNMRV LGASGVLATG GILLALLWPA PMAVLTGFAL
MGVGAANMVP IFFITASRLP GVPAAEGIAA VARFAYVGLL IGPVIIGLIA HRSDLRWGLS
VVALTMAMIA LAGPRAIRLP EHR
|
|---|
| |