Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_0461 |
Symbol | |
ID | 8018087 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012856 |
Strand | + |
Start bp | 487403 |
End bp | 487906 |
Gene Length | 504 bp |
Protein Length | 167 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 644829241 |
Product | fimbrial protein precursor PilE (MS11 antigen) |
Protein accession | YP_002980439 |
Protein GI | 241662079 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4968] Tfp pilus assembly protein PilE |
TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.653734 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGCTTTA AGCACAGCAA GGAAACAACG CGTCGAGCAG GCGGATTTAC GCTGATCGAG CTGATGATCG TTGTGGCGAT TGTTGGGATT CTGGCAGCGA TTGCGCTGCC GGCTTACAAC AACTACATGG TCAAGTCGAA GTTGACCGAG GCGATCGCGA CGCTGGATTC GGCGCGCGTG GCGGTTAACG AAGCGTACAC GTCTGGCGGT GGTGTGTTTC CAGCGCAGCC ACCGGTTGTT GTGCAGGCGG TAGCAAACAA CGCGAAATAT GTGACAGGCA TCCAGTACAA CCTTGGCCCG GCTTCCACCG TGGGTGTGGT CGTTAAACTC GGGAATACTG GGGCTGCCTC TATCGATAAC GCGTATCTCG GCATCTTTGG GCAGGGTAAG GTTGACGGAA CGGTGGCCTG GGCGTGCTCG ACGGCGAGAA CCCCGGGAGA CTTTGCCTCA GGTGCCGCAA TGACTGCCAT GTATCCGTAT TTACCTCTCG CGTGTCAGAA CTGA
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Protein sequence | MGFKHSKETT RRAGGFTLIE LMIVVAIVGI LAAIALPAYN NYMVKSKLTE AIATLDSARV AVNEAYTSGG GVFPAQPPVV VQAVANNAKY VTGIQYNLGP ASTVGVVVKL GNTGAASIDN AYLGIFGQGK VDGTVAWACS TARTPGDFAS GAAMTAMYPY LPLACQN
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