Gene Rpic12D_0461 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_0461 
Symbol 
ID8018087 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp487403 
End bp487906 
Gene Length504 bp 
Protein Length167 aa 
Translation table11 
GC content57% 
IMG OID644829241 
Productfimbrial protein precursor PilE (MS11 antigen) 
Protein accessionYP_002980439 
Protein GI241662079 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4968] Tfp pilus assembly protein PilE 
TIGRFAM ID[TIGR02532] prepilin-type N-terminal cleavage/methylation domain 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.653734 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGCTTTA AGCACAGCAA GGAAACAACG CGTCGAGCAG GCGGATTTAC GCTGATCGAG 
CTGATGATCG TTGTGGCGAT TGTTGGGATT CTGGCAGCGA TTGCGCTGCC GGCTTACAAC
AACTACATGG TCAAGTCGAA GTTGACCGAG GCGATCGCGA CGCTGGATTC GGCGCGCGTG
GCGGTTAACG AAGCGTACAC GTCTGGCGGT GGTGTGTTTC CAGCGCAGCC ACCGGTTGTT
GTGCAGGCGG TAGCAAACAA CGCGAAATAT GTGACAGGCA TCCAGTACAA CCTTGGCCCG
GCTTCCACCG TGGGTGTGGT CGTTAAACTC GGGAATACTG GGGCTGCCTC TATCGATAAC
GCGTATCTCG GCATCTTTGG GCAGGGTAAG GTTGACGGAA CGGTGGCCTG GGCGTGCTCG
ACGGCGAGAA CCCCGGGAGA CTTTGCCTCA GGTGCCGCAA TGACTGCCAT GTATCCGTAT
TTACCTCTCG CGTGTCAGAA CTGA
 
Protein sequence
MGFKHSKETT RRAGGFTLIE LMIVVAIVGI LAAIALPAYN NYMVKSKLTE AIATLDSARV 
AVNEAYTSGG GVFPAQPPVV VQAVANNAKY VTGIQYNLGP ASTVGVVVKL GNTGAASIDN
AYLGIFGQGK VDGTVAWACS TARTPGDFAS GAAMTAMYPY LPLACQN