Gene Rpic12D_0423 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_0423 
Symbol 
ID8018048 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp442324 
End bp443694 
Gene Length1371 bp 
Protein Length456 aa 
Translation table11 
GC content64% 
IMG OID644829202 
Product(dimethylallyl)adenosine tRNA methylthiotransferase 
Protein accessionYP_002980401 
Protein GI241662041 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0621] 2-methylthioadenine synthetase 
TIGRFAM ID[TIGR00089] RNA modification enzyme, MiaB family
[TIGR01574] tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.502734 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAAAG TCTTCATCAA AACCTACGGC TGCCAGATGA ACGAGTACGA CTCGGACAAG 
ATGTCCGACG TACTCAACGC GGCTGAAGGC CTCGTCCCCA CCGACACGCC CGAAGATGCG
GACGTGATCC TCTTCAACAC CTGCTCCGTG CGCGAAAAGG CGCAGGAGAA AGTGTTTTCA
GAACTCGGCC GCGTGAAGGC GCTCAAGGCG CTCAAGCCGG ATCTCGTGGT CGGCGTGGGC
GGCTGCGTGG CCAGCCAGGA AGGCGCGTCC ATCGTGGCGC GTGCCCCTTA CGTTGACGTG
GTGTTCGGGC CGCAGACGCT GCACCGCCTG CCCGACCTGA TCGCAGCACG CCGCCGCACG
GGCCGCTCGC AGGTCGACGT GTCGTTCCCA GAGATCGAGA AGTTCGACCA CCTGCCGCCC
GCGCGCGTGG ATGGCGCCAG CGCCTTCGTA TCGATCATGG AAGGCTGCTC GAAATACTGC
AGCTACTGCG TCGTGCCGTA CACGCGCGGC GAAGAGGTCT CGCGCCCGTT CGACGACGTG
CTGGCCGAAG TGGCCGGCCT GGCCGAACAG GGCGTGCGCG AAGTCACGTT GCTGGGCCAG
AACGTCAACG CCTACATCGG CAAGATGGGC GACACGAGCG AGCGTGCGGA TTTCGCGCTG
CTGCTCGAAT ACGTGGCCGA GATTCCGGGC ATCGAGCGCA TCCGCTACAC GACCAGCCAC
CCGAAGGAAT TCAGCTCGCG CCTGATCGAG GCCTATGCCA CCAACCCGAA GCTCGTCGAC
CACCTGCACC TGCCCGTGCA GCATGGCTCC GACCGCATCC TGATGGCGAT GAAGCGCGGC
TACACGGTGC TCGAATACAA AAGCAGCATC CGCAAGCTGC GCGCGATCCG GCCAAATATC
TCGATCGCCA CCGACTTCAT CGTCGGCTTC CCGGGCGAGA CGGATGCGGA CTTCGCCAAG
ACGATGGACC TGATTCACGA GATCGGCTAC GACACATCGT TCAGCTTTAT CTACAGCCCC
CGCCCCGGCA CGCCGGCCGC CAACCTGCCC GACGATACGC CGCAGGCCGT CAAGCTCGAA
CGCCTGAAAC ATTTGCAGGC GACCATCGAA GAGAACGTGG CGCGCATCAG CCAAGGCATG
GTCGGCAGCG TGCAGCGCAT TCTGGTGGAA GGCCCGTCGC GCAAGGATCC GACTGAACTG
CACGGCCGCA CCGAGAACAA CCGTGTCGTG AACTTCGCGC TGCCCGATCT GCCGCAGGCG
CGCCGCGACC AGCTGATCGG CCAGATGCTG GACGTGCGTA TCGTGCACGC GTTCCCGCAT
TCGTTGCGTG GCGAAGTGGC CGAACAGCGT ACGGCCAGCG CGACTCACTG A
 
Protein sequence
MKKVFIKTYG CQMNEYDSDK MSDVLNAAEG LVPTDTPEDA DVILFNTCSV REKAQEKVFS 
ELGRVKALKA LKPDLVVGVG GCVASQEGAS IVARAPYVDV VFGPQTLHRL PDLIAARRRT
GRSQVDVSFP EIEKFDHLPP ARVDGASAFV SIMEGCSKYC SYCVVPYTRG EEVSRPFDDV
LAEVAGLAEQ GVREVTLLGQ NVNAYIGKMG DTSERADFAL LLEYVAEIPG IERIRYTTSH
PKEFSSRLIE AYATNPKLVD HLHLPVQHGS DRILMAMKRG YTVLEYKSSI RKLRAIRPNI
SIATDFIVGF PGETDADFAK TMDLIHEIGY DTSFSFIYSP RPGTPAANLP DDTPQAVKLE
RLKHLQATIE ENVARISQGM VGSVQRILVE GPSRKDPTEL HGRTENNRVV NFALPDLPQA
RRDQLIGQML DVRIVHAFPH SLRGEVAEQR TASATH