| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_0397 |
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| Symbol | |
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| ID | 8018022 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012856 |
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| Strand | - |
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| Start bp | 411972 |
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| End bp | 413039 |
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| Gene Length | 1068 bp |
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| Protein Length | 355 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644829176 |
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| Product | TIM-barrel protein, nifR3 family |
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| Protein accession | YP_002980375 |
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| Protein GI | 241662015 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.561746 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCAGATCG GACCGCATAC CCTTCGCAAC AACCTGTTCG TCGCCCCCAT GGCGGGCGTG
ACGGACCGCC CGTTCCGTCA GCTGTGCAAA CGGCTGGGCG CGGGCTATGC GGTGTCCGAG
ATGGTCGCGT CCAACGCGCA GTTGTGGAAA AGCGAGAAGA CGATGCGGCG CGCCAACCAC
ACGGGCGAGG TCGAGCCGAT CGCCGTGCAG ATTGCCGGCG CCGAGCCGAT GATGATGGCC
GAGGCCGCGC GCTACAACGT CGATCGCGGC GCGCAGATCA TCGACATCAA CATGGGCTGC
CCCGCCAAGA AGGTGTGCAA TGTGGCCGCC GGTTCTGCCC TGCTGCAGAA CGAGCCGCTG
GTCCAGCGCA TTGTCGAGGC CGTGGTGGGT GCGGTCGGCG ACCGCGTGCC CGTGACGCTC
AAGATCCGTA CCGGTTGGGA CCGCGAACAC CGCAACGCAT TGAGCGTGGC GCGCATTGCA
CAGGACGCCG GCATCAGCAT GCTGACCGTG CATGGCCGCA CGCGCGCCGA TCTGTATCAC
GGTGAAGCGG AATACGACAC CATCGCCGCG GTCAAGGCGT CGGTGCGCAT TCCGGTAGTG
GCCAATGGCG ATATCACCAC ACCGGCCAAG GCCAAGCACG TGCTGGCCGT GACCGGCGCC
GACGCCATCA TGATCGGCCG CGCGGCGCAG GGGCGCCCGT GGCTGTTCCG CGAGATCGAG
CATTTCCTGC AGACCGGCAC GCTGCTGCCG GCGCCGGAAG TGGAAGAGAT TCGCGGCATC
ATGAACGCGC ATCTGGAAGA GCACTACGCG TTCTATGGCG AATACACCGG CGTGCGCACC
GCACGCAAGC ACATCGCCTG GTACACGCGC GGGTTGGCGG GGGCCAACCT GTTCCGCCAC
CGCATGAACA CCATCGAGGA CACAGTGGCC CAGCTGGCCG CCGTCAACGC GTTCTTCGAC
GAGCAGCGTG CGCTGTCCGA CCGGCTGGTC TACGAAGACC AGGCAACCGG TGGCGACCAC
CCCACGACGG GCAACAACGA CAACAACAAG GAACTGCTTG CCGCATGA
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| Protein sequence | MQIGPHTLRN NLFVAPMAGV TDRPFRQLCK RLGAGYAVSE MVASNAQLWK SEKTMRRANH
TGEVEPIAVQ IAGAEPMMMA EAARYNVDRG AQIIDINMGC PAKKVCNVAA GSALLQNEPL
VQRIVEAVVG AVGDRVPVTL KIRTGWDREH RNALSVARIA QDAGISMLTV HGRTRADLYH
GEAEYDTIAA VKASVRIPVV ANGDITTPAK AKHVLAVTGA DAIMIGRAAQ GRPWLFREIE
HFLQTGTLLP APEVEEIRGI MNAHLEEHYA FYGEYTGVRT ARKHIAWYTR GLAGANLFRH
RMNTIEDTVA QLAAVNAFFD EQRALSDRLV YEDQATGGDH PTTGNNDNNK ELLAA
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