Gene Rpic12D_0207 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_0207 
Symbol 
ID8017830 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp218003 
End bp220915 
Gene Length2913 bp 
Protein Length970 aa 
Translation table11 
GC content55% 
IMG OID644828988 
ProductUvrD/REP helicase 
Protein accessionYP_002980188 
Protein GI241661828 
COG category[L] Replication, recombination and repair 
COG ID[COG0210] Superfamily I DNA and RNA helicases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00182272 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value5.25372e-08 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGCCAATAC TCACAGAAAT TAACAGTCTG GTTGAGTCCG AAGGATTGAC ACGCCCACAA 
GCCAGCGCCG TCGTCGACGA CGCAAGTGCG ATTCTCTGTA TCGCCTGCGC GGGATCAGGA
AAATCTCAAA CACTGGCCTA TCGCATCGCC AGGTTAATGC ACCAAGGCGT GCCCCCCAAC
ACAATCGTCG CCATCACGTT CACCGAGAAA GCGGCTGACT CCATCAAACG TCGAATAGCT
GACGTTTTAG TTCGAACCGG CCAAAGCCCC AACCTAATAG GGCAGATGTT TATCGGAACT
ATCCACGCGT TCTGCCAGAA CGTGCTGGCG GACGCCGACG CAATCTTTCG CCAGTACGAC
GTGCTCGATG GGAACCGATT CATGCTGTAC CTCATTTCTA GGTACTATGA CCTCGGCATA
TCGGACCTCC GTCCAAGGTT CAAGGATCGG TACTTCGAAA CGCTCGAAAA CGTCCGAAAT
GCGTGGAACA TCTACCGCGA CGAAGGCCTT TCCATTGCCG AAATCGATGC CAGCGACGCG
CAGTTGGGGA AAACACTTCG GTCTATCCAA GACGGCCTTG CTCGTGACCA GTTCATTGAC
TTTGCGTCGA TGGTCCGTGA AGTGGCAGAC CGTTCGCAAT CGGCGGGAAG GGTGCGCGAA
CGTCTCGCAT CTATTCGGCA TCTCCTGATC GACGAGTATC AAGACGTATC CGGTGCGCAG
GAAGAACTTG TCGCTGCTGT TCACAGTTTA GGGGGAAGCA TTTTCGTCGT AGGCGACGAT
GATCAATCGA TCTACGGTTG GCGTGGCGCC CATGTGGCCA ATATCCTCGA ATTCGAGGAC
CGCTACCCGA ACGTGAGCCG ACACGTTCTA GACATCAACT TCCGCAGCAC GCGCGCCATT
GTGGAGACTT CCAATGCGTT CGCGGCAGCT CAGCTTGGCC CGCAGCGACT GCCAAAGCAA
CCGGAAGCCT ATGCAGACCA GGGACCGCGA CAACTACTGG TCCACCACTT CCCAACACGA
GCGGAGGAAG CCGAGTGGGT CGCAGACCGT ATCGCTACCC TCATCGGAGC GGAATACAAG
AAGAGGCCGG ATGACCCCGG ACGCGGCTTG ACTCCGGCGG ATTTCGCAAT CCTTATGCGA
TCCACAAAAT CGCCTGAGCA GGACGGCAGT CCTCGACACG CGGCGTTTTC CGATGCTCTT
GCCATGCGCG GCATCGACTT CACGTTAAGC GCCGGCGGAA GTGTCTTTGA TCGACCGGCT
GTACAGGCGT TGCGAGAGGT TTTTTCCGCG CTAGAGCAAG GAACCATCGA TCGGAATTTG
GCCGATGCCT TGGTCACAGA GCACATTCGC CCCGCTTATC CGCATGTAAA CGTAAGGGAG
ACCTACAACG TCCTGGCGGA GTGGGGGCGA CGTATTCACC AGCCAGCTGG CTCTGCGCGA
CAACGGCTGT TCCCGCAGGA TCTCCTATTC GATCTACTCG AAGCATTTGG CTTGGCGAAA
TCCGACTTCG ATGAAGACGT CATGAGGGAC ATCGGGCTGT TCAGCCGTAT GCTGCAGGAT
GTCGAATCCG TCTACCTCAG CGTAGATTCG ACGAACCGCT TCCGCGCCGT AGTGCGATTC
CTTCAACAAG TTGCCGACAA GGGTTATGAC GTCAGCACAA AGGATTCAGT GTCACGCCCG
AACGCGGTAA CCATCTCCAC TGTCCACCAA GTGAAAGGGC TGGAGTTTCC AGTGGTGTTT
GTCGTGGACG TTGTACCTGG ACGCTTCCCC GGCAAACAAT CGAGTTTTGA CTCACTGCTG
CCTGCCAATC TCATGGCGTC AGCAATTGCC CACGGCGCCT ATACCAACAA TGTCTTTGCA
GAAGCACGCC TGTTCTATAC AGCAATGACG CGGGCGGAGC GGTTCCTGCA TGTCACAGGC
GCGGCGCTAC TGCCAAATGG AAAGCGCTCC AACCGGCAAT CCACATTTGC TGCCGCGCTG
AAAGATATCG AGCTTTGCAC AGACCCGACG CGCTTGCCGG AAGACCTGAA CCGAGCGCCC
CAGGAGAGAG ATGCCGAAGA AGCTACGCTG CCCACTTCGT TCTCTGACGT TAAGTACTAT
CTAAACTGCC CCAAGAACTA TCAGTTTCGA AAGAGTTATG GATTCAGTCC ACGAGTCCCT
GAACTTTTCG GCTATGGCAC CGTTGTCCAC GTCGCCATCG AAAAGCTCCA TGAGATGTTT
CGCGACAGAG CGCCGACTCC TGATGAGGCA CAAGCCGTCG CGGAGCAGAA CTTCCATTTG
AAGCATGTTG CTCCTAGCCG TGACCCCGAA ACTCGCCCCG GTGCCTATGA GCAAGCCAAG
GAGAAGGCTC GCAAAATCGC TGGTGAGTAC GTACAGCAGT ATGGGACCGA TTTCGTTCAA
CAACGGCAGG TAGAAGTTAG GTTCGAAATC CCAGCTCGCG GATGCCTGAT TACAGGCGCT
ATAGACCTGC TTATGAAATG CGACGATGTC GGCGAAATCG TCGAGGCACA CGTTCTGGAC
TTCAAGACAA TGGAGGGCGG AAAAGATCCC TTAGCGAACG CGAAGCTTGA TTGGAGAGAA
TTGTCTCTTC AGGTACAGCT CTACGCTAAG GCGGCGCGAG AGGTCTACAG TGAGAACGCA
GCGACCGGTT CCATACACTT GCTGAAGGAC AATCGCCGCA TTGAAATCCC GATTGATCCG
GAATCGGTCA ATGCTGCGAT CAAGAACGTC GAATGGGCGG TGCAAGGCAT CTTGGATCAA
GACTTCCCAA TGCGCCCATC AACACAGAAA TGCGAAGCGT GTGACTTCCA TAGACTCTGC
CCTAAACAGA AACAAGACTT CCATCCTGGC ATGGGCAAAC CTCCAAAAAT CAATACTCCG
GCTGGTCCGC AACTGACCTC TGCTCTGGAG TAA
 
Protein sequence
MPILTEINSL VESEGLTRPQ ASAVVDDASA ILCIACAGSG KSQTLAYRIA RLMHQGVPPN 
TIVAITFTEK AADSIKRRIA DVLVRTGQSP NLIGQMFIGT IHAFCQNVLA DADAIFRQYD
VLDGNRFMLY LISRYYDLGI SDLRPRFKDR YFETLENVRN AWNIYRDEGL SIAEIDASDA
QLGKTLRSIQ DGLARDQFID FASMVREVAD RSQSAGRVRE RLASIRHLLI DEYQDVSGAQ
EELVAAVHSL GGSIFVVGDD DQSIYGWRGA HVANILEFED RYPNVSRHVL DINFRSTRAI
VETSNAFAAA QLGPQRLPKQ PEAYADQGPR QLLVHHFPTR AEEAEWVADR IATLIGAEYK
KRPDDPGRGL TPADFAILMR STKSPEQDGS PRHAAFSDAL AMRGIDFTLS AGGSVFDRPA
VQALREVFSA LEQGTIDRNL ADALVTEHIR PAYPHVNVRE TYNVLAEWGR RIHQPAGSAR
QRLFPQDLLF DLLEAFGLAK SDFDEDVMRD IGLFSRMLQD VESVYLSVDS TNRFRAVVRF
LQQVADKGYD VSTKDSVSRP NAVTISTVHQ VKGLEFPVVF VVDVVPGRFP GKQSSFDSLL
PANLMASAIA HGAYTNNVFA EARLFYTAMT RAERFLHVTG AALLPNGKRS NRQSTFAAAL
KDIELCTDPT RLPEDLNRAP QERDAEEATL PTSFSDVKYY LNCPKNYQFR KSYGFSPRVP
ELFGYGTVVH VAIEKLHEMF RDRAPTPDEA QAVAEQNFHL KHVAPSRDPE TRPGAYEQAK
EKARKIAGEY VQQYGTDFVQ QRQVEVRFEI PARGCLITGA IDLLMKCDDV GEIVEAHVLD
FKTMEGGKDP LANAKLDWRE LSLQVQLYAK AAREVYSENA ATGSIHLLKD NRRIEIPIDP
ESVNAAIKNV EWAVQGILDQ DFPMRPSTQK CEACDFHRLC PKQKQDFHPG MGKPPKINTP
AGPQLTSALE