| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_0065 |
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| Symbol | |
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| ID | 8017688 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012856 |
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| Strand | - |
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| Start bp | 69524 |
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| End bp | 71992 |
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| Gene Length | 2469 bp |
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| Protein Length | 822 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 644828849 |
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| Product | type VI secretion system Vgr family protein |
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| Protein accession | YP_002980049 |
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| Protein GI | 241661689 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGCAGTC ATTTGCCTGT TTCCGCACGC ACCGTTTCTG TTAGCGGCCC TGCGCTGCCG
GACGTCATGG GCAAACCGCT TTTCACGTTC GTTCGCCTGC AAGGCACAGA AAACCTGTGC
AGTTTGTACG AATACGAAGT CGAGCTGAAA ACTCCTGACA AGGATTACAA CTTCGGCGGC
CCAGAAGGCA ATTTCGATCT GCGCGCCATG AATGGCCGTG AGCTGACCGT GCGCGTCGAG
CTGGACGGCA TGGGAACGGG GTTAGATGGC GGCGTCGGTG CCGGCTCGCG CGAGATCAGC
GGCATCGTAG ACCGCGCTCG CTACTTGCGT GCCGAGGGCC GTCATTTTGT TTACGGCCTG
ACCCTGCGCC CCTGGCTCTG GATTGCTTCG CAAAACCGGA ACAGCCGGAT CTTTGAGAAC
AAGACCGATA TTGAGGTCAT TGAAGAAGTC CTGTCGGCGT ACAACTTCCC GGTGGAGCGT
CGCCTCGACA CGGCGAAGTA TCCCAGGCGC ATCTACCGAA CCCAGGCCGA CGAGAGCGAT
TACGCCTTCA TCGCCCGCCT CATGGAACAT TGGGGCATTT CATGGTTCTT CGAACATGTG
GAAGGCAAGC ACAGGCTGAT CCTCGCCGAC ATGCCAGGTG CCTACCGGCG CCCTGCCAGC
GAGGCATATC ACACGCTGGA GGTATATCCG CCGGACTTCA AGCCGGATCA GGAACACTTG
GACACCTTTG CCGTCGTCGA CGCAGTGGTT GCGGGCAAGT ACACGACGAG TGCCTATAGC
TTTACGCAGC CGCGTGGCGA TCTCACCGCC AGCAGTTCCG ACCCGCGCGA CACGGGTATG
AACAGTGGAA ACGTACATCA GGAGGTCTAC GACTTCCCGA GTGAGCACGC GCAGCCGGCC
ACCGACAACC GCCCCTGGAA CGAGGGCGAC ATGATTGCGC GCATCCGCAT GGAAGCGGTT
CGCTCGCGCG GCCTGCGCTG CTTTGGCACG GGCAATCTGC GAGCAGTCAT CCCCGGCCAT
ACTTTCGTAC TGCAAGGACA CCCGCAGAAG GCAGCCAACC GCGAATACGT GGTGATCGGG
GCCAACCTGA CGCTCGAAGA TGTGGCTGCA GCTTCAGGTG AGGGCCAGCG CTGGCATTGC
CGCGTCGAGT TCGAGTGCCA CCCAACGCAT GAGATTTTCC GGCCAGCGCG CGACACACCG
TGGCCGGTCA TCACAGGCCC GCAAAGCGCG ACCGTTGTCG GTCCGGATGG CCACGTCACC
CATGCGGATC AGTACGGGCG GGTCCGGGTC GAGTTTCCGT GGGATCGCTT CAAGAAAATG
GCCTGCTGGA TGCGGGTGTC CACCTCGTGG GCCGGTTCGC AGTATGGGCA GATCAGCATT
CCGCGAATCG GGACGGAGGT GCTGGTCAGC TTTCTGGACG GCGGCAACCC GGACAAGCCC
ATCATTACCG GCGCCGTCGC CAACAGCTTG AACATGCCCC CCTGGCGCCT GCCGGACCAG
CATGTCCTGA CCGGCATCCG CACGCGCGAG CACGAGGGCT CACGCAGCAA CCACCTAGTC
TTTGACGACA CAAAGGGGCA GATTCAGGCG CAACTTTCGT CAGACCACCT GACCTCGCAG
ATCAGCATGG GGTACCTCAC CGGGATACCC AATCATGCCG GCCGTCAGGA TAAGCGTGGC
GAGGGGCTGG AGGCACGAAC CGATGGCCAT GCCTCGCTTC GGGCCGCCTT GGGCTTGCTG
CTCACCACCC ACCGGCGCGA TAAGGCCGAT GGCGGAGCGA TGAGCATTGA AGACGTGATC
GCACTCATGC AGGAGGCGCT CACGCTGGCT GACTCGCTCG CACAAAGCGC CGTCAACGCA
CAGGCCCAAG CCGGCCAGCA GAAAGAGGTC GCCAAAGCGC TGCGCCTGCA GGCAGAGGCA
ATCCAGGGCG GCGGCAAGCT GGCCGAATTC CGCGAGCCAC ACATCGCCAT TGCCAGCCAA
GCGGGCATCG CAACCTCGGC GCCGGGTAGC ACGCATGTCG CCAGCGGAGA ACACATCGCG
CTGACCAGCG GGCAACACCT GTCGTTCTCT TCCGGCGGTG GCCTGTATGC CACCGCAACT
GAGCGCTTTT CGCTGTTCGT GCAGCGCGAT GGCATCAAGC TGTTCTCCGC AAAGGGCAAG
GTCGAGGTGC AAGCGCAATC GGATGCGATG AACCTGGTCG CGCAAAAGGT ACTTCGCCTT
CTTTCCACGA CGGATTGGGT CGAGATCAGC GGCAAGAAGG GCATCCGCTT GAACGTGGGC
GGCAATGAGA TTCGCATCAC ACCGGAAGGC ATCGAGAACT TGTCGGCCGG CAAGTGGGCG
GTCTACTCGG GCAGCAAGCT GCTCACCGGC CCCAAAGCGG CCCCCTACGC CATGCCCACC
ACCAAGCTCT GCACCCACCT GGCTGAGGGC GCAGCCGCCA GCGGCGCGGG TGCCGTGCCG
CTGCATTGA
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| Protein sequence | MGSHLPVSAR TVSVSGPALP DVMGKPLFTF VRLQGTENLC SLYEYEVELK TPDKDYNFGG
PEGNFDLRAM NGRELTVRVE LDGMGTGLDG GVGAGSREIS GIVDRARYLR AEGRHFVYGL
TLRPWLWIAS QNRNSRIFEN KTDIEVIEEV LSAYNFPVER RLDTAKYPRR IYRTQADESD
YAFIARLMEH WGISWFFEHV EGKHRLILAD MPGAYRRPAS EAYHTLEVYP PDFKPDQEHL
DTFAVVDAVV AGKYTTSAYS FTQPRGDLTA SSSDPRDTGM NSGNVHQEVY DFPSEHAQPA
TDNRPWNEGD MIARIRMEAV RSRGLRCFGT GNLRAVIPGH TFVLQGHPQK AANREYVVIG
ANLTLEDVAA ASGEGQRWHC RVEFECHPTH EIFRPARDTP WPVITGPQSA TVVGPDGHVT
HADQYGRVRV EFPWDRFKKM ACWMRVSTSW AGSQYGQISI PRIGTEVLVS FLDGGNPDKP
IITGAVANSL NMPPWRLPDQ HVLTGIRTRE HEGSRSNHLV FDDTKGQIQA QLSSDHLTSQ
ISMGYLTGIP NHAGRQDKRG EGLEARTDGH ASLRAALGLL LTTHRRDKAD GGAMSIEDVI
ALMQEALTLA DSLAQSAVNA QAQAGQQKEV AKALRLQAEA IQGGGKLAEF REPHIAIASQ
AGIATSAPGS THVASGEHIA LTSGQHLSFS SGGGLYATAT ERFSLFVQRD GIKLFSAKGK
VEVQAQSDAM NLVAQKVLRL LSTTDWVEIS GKKGIRLNVG GNEIRITPEG IENLSAGKWA
VYSGSKLLTG PKAAPYAMPT TKLCTHLAEG AAASGAGAVP LH
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