| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_0055 |
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| Symbol | |
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| ID | 8017678 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012856 |
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| Strand | + |
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| Start bp | 59586 |
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| End bp | 61325 |
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| Gene Length | 1740 bp |
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| Protein Length | 579 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644828839 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT family |
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| Protein accession | YP_002980039 |
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| Protein GI | 241661679 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTGGACGC TGTGGATTCG ACGCGCTGAC GGTGGTGGTG CATCCCTTGT TTCGTCCCCT
GCCGGGGCCG ACTTACTTTC TTTGTCTTGC CAAAGAAAGG TAAGCAAAGA AAGGCGCGCC
CGAGATGGCG ACTTCCCCTT GAATTTATGT AACCGGGCGG AGACGGGGAA AACTCGCTCC
GCTCAGACAG TTCCCCGTCT TTTTTCCGCC CGCTTACAGA AATTCAAGGC GCCATCTAAG
GCAGGGTACG GCCAAACCGT CCGGCGGTAC GTGTTGACGC TACGGCGAGC GTTGGCGGAT
CGTGAGTGTT TGCTTGGCGT TGTGATTGTT GCCGCGTTGT CTCTGAGCGG CTGTGCCGTC
GGTCCCGATT TCAAAGCGCC GGCGGGGCCT GCGGCTACCG GGTATTCCGC GCAGCCCGTC
TCGCGCGAAA CCGCATCCGC GCCCGTTGTT GGCGGGGAAG CGCAGCATCT TGTCGATGCC
AACGTGCCGG CGGATTGGTG GCACTTGTTC CGGTCCCCCG CGCTGGATGC GTTGGTGGAC
GAGGCGTTGC GCGCGAGCCC GTCGGTCATG CAGGCGGAGG CGCGCTTGCG TCAGGCGCAG
GCCGAAGCGC AGGCGCAGTT CGGCTATGCG TTGCCGTCGG TGGATGGCAC CGTGTCGGCC
GTGCGTCAGC AGATCAACCC GGAGGCGTTC GGTTTCAACA CGCCCAAGCC GGGGCCGTTC
ACGTTGTATT CGGCGTCGGT GTCGGTGTCG TATGCGCTGG ATATTTTTGG CGGCGTGCGC
CGCGCGCTGG AAGCATCGCA AGCGCAGGTC GATACACAGC GTTATGAGCT GGAGGCGGCG
CGGCTGTCCC TGGCGGGCAA TGTGGTGACG ACGGCGGTGC GGATTGCCGC GCTGGAAGCG
CAGATCGCCA CCACACAGCG ATTGGCGGCC AAGCAGCGCA AGCAGCTGGA AATCACTGAG
CGGAGGCTGA GCGTGGGTGG CGTCGCGCAG GTCGATGCGT TCTCGCAGCG CACGCTCGTC
GCGCAGACCG ACGCCACGAT GCCGCCGCTC ATGCAACAGG CCGCGCAGCA GCGGCACCGT
CTATCGGTAT TGCTGGGCCG CGAGCCCGGC GCCGGCTTGC CGGAGTTGCC GTCACTTGAC
GCGCTGCATT TGCCCGATCC GCTGCCGGTG TCGCTGCCAT CCACGCTCGC GCAGCGACGC
CCCGACATTC GCGCCGCCGA AGCGATGTGG CACGAAGCCA GCGCCAACGT GGGCGTGGCC
ACGGCCAACC TGTTCCCGCG CATCACGTTG TCCGCAGGCC TGGGTTCGGA AACCACCAGC
TTCCGCAACC TCCTGGGCGC CGGATCGAGC ATCTGGAACC TGGGCGCAGG GCTCACGCAG
CCGATCTTCC ACGGCGGCAC CCTGCGCGCG AAAAAACGCG AAGCCGAAGC TGCCTACGAT
GCAGCCGGCG CCGCCTACAA ACAAGCCGTA TTGCAAGGGT TGCAAGAAGT GGCCGACGCC
CTGCACGCCG TCAACAACGA TGCCCAAACG CTTCAGGCCC GAGCGTTGGC AACCGACCAG
GCGCACCAGA CCCTGCGCGC TGCCCAAGCT CGCCACGCCG CTGGCGGGAT CAGCACGCTA
ACGTTGCTGG ACGCCCAGCG ACAGGTCGAT CAAGCCACGC TGCAACAGGT GCAGAGCCAG
GCGGATCGGT TGCTGGATTC CGCCGCGCTC ATGCAGGCGT TGGGTGGCGG TTGGCAGTAG
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| Protein sequence | MWTLWIRRAD GGGASLVSSP AGADLLSLSC QRKVSKERRA RDGDFPLNLC NRAETGKTRS
AQTVPRLFSA RLQKFKAPSK AGYGQTVRRY VLTLRRALAD RECLLGVVIV AALSLSGCAV
GPDFKAPAGP AATGYSAQPV SRETASAPVV GGEAQHLVDA NVPADWWHLF RSPALDALVD
EALRASPSVM QAEARLRQAQ AEAQAQFGYA LPSVDGTVSA VRQQINPEAF GFNTPKPGPF
TLYSASVSVS YALDIFGGVR RALEASQAQV DTQRYELEAA RLSLAGNVVT TAVRIAALEA
QIATTQRLAA KQRKQLEITE RRLSVGGVAQ VDAFSQRTLV AQTDATMPPL MQQAAQQRHR
LSVLLGREPG AGLPELPSLD ALHLPDPLPV SLPSTLAQRR PDIRAAEAMW HEASANVGVA
TANLFPRITL SAGLGSETTS FRNLLGAGSS IWNLGAGLTQ PIFHGGTLRA KKREAEAAYD
AAGAAYKQAV LQGLQEVADA LHAVNNDAQT LQARALATDQ AHQTLRAAQA RHAAGGISTL
TLLDAQRQVD QATLQQVQSQ ADRLLDSAAL MQALGGGWQ
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