| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_0033 |
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| Symbol | dapF |
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| ID | 8017656 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012856 |
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| Strand | + |
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| Start bp | 38320 |
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| End bp | 39198 |
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| Gene Length | 879 bp |
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| Protein Length | 292 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644828817 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_002980017 |
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| Protein GI | 241661657 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACTGC ACTTCACCAA GATGCACGGC GCGGGCAACG ACTTTGTCGT GCTCGACGGC
ATCCAGACCC CGATCGACTT CACGCCCGAG CAATGGGCTG CCATTGCCGA CCGCCATTTC
GGCGTGGGGG CGGACCAGCT CCTGCTGGTC GAGCGTTCAA CGCGGCCCGA CGTCGATTTC
CGCTACCGCA TCTTCAACCA CGACGGTGGC GAGGTGGAGC ACTGCGGCAA CGGCGCGCGC
TGCTTCGTCA AGTTCGTCAC CGACCGCGGC CTGACGGACA AGCGCACCGT GCGTGTTGAA
GTCATGAACG GCATCGCCAC GCTGACGATG CAGGACGACG GCCAGGTCAC GGTCGACATG
GGCGCACCGG TGTTCGAGGC GGCGCGCCTG CCGTTCCTGC CCGAAGGCCT GCCCACCCGC
GTCGAGGGCG ACGACACGCA GCACGCGCTG CAGATCAACG GCCGGACCGA ATGGCTGTCG
ACCGTGTCGA TGGGCAACCC GCACGCCGTG CAGATCGTCG ACGATACGGA AGCCTTCCCC
GTGCTGGAAG ACGGCCCGCT GATCGAATCG CATGCCGTGT TTCCGCGTCG CGTGAATGCG
GGCTTCATGC AGATCGTCGA TCGCCATTCC GTGCGCCTGC GCGTGTACGA GCGCGGCGCG
GGGGAGACGC TCGCCTGCGG CACCGGCGCC TGCGCAGCAG TGGTGGCCGG CATCCGCCGT
GGCGTGCTCG ATTCGCCCGT CAAGGTAACC ACGCATGGCG GCGACCTGAC CATCGCGTGG
GCGGGCGGCG GCCAGCCGGT CATGATGACG GGCCCCGCCA CGACCGTGTT TGAAGGCACG
CTGGATCTGG ATGCGCTCAA GCTGACCGTT GCCCACTAG
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| Protein sequence | MKLHFTKMHG AGNDFVVLDG IQTPIDFTPE QWAAIADRHF GVGADQLLLV ERSTRPDVDF
RYRIFNHDGG EVEHCGNGAR CFVKFVTDRG LTDKRTVRVE VMNGIATLTM QDDGQVTVDM
GAPVFEAARL PFLPEGLPTR VEGDDTQHAL QINGRTEWLS TVSMGNPHAV QIVDDTEAFP
VLEDGPLIES HAVFPRRVNA GFMQIVDRHS VRLRVYERGA GETLACGTGA CAAVVAGIRR
GVLDSPVKVT THGGDLTIAW AGGGQPVMMT GPATTVFEGT LDLDALKLTV AH
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