| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_0022 |
|---|
| Symbol | |
|---|
| ID | 8017645 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | - |
|---|
| Start bp | 25484 |
|---|
| End bp | 25954 |
|---|
| Gene Length | 471 bp |
|---|
| Protein Length | 156 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 644828806 |
|---|
| Product | alkylhydroperoxidase like protein, AhpD family |
|---|
| Protein accession | YP_002980006 |
|---|
| Protein GI | 241661646 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2128] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR00778] alkylhydroperoxidase AhpD family core domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGCAAG CCCCCCGCAT TGCCTACTTC CAACTCGCAC CGAAGGCGTT CAACAACCTG
CTGAACCTGT CCAACGGCCT GCGCCGCGAC TTGCTGGGCG CAAGGCTGGT CGACCTCGTA
CTGCTGCGTG TGTCGCAAAT CAACGGGTGC GCCTTCTGCA TCGACATGCA CTGGAGCGAC
CTGATGAAGA TGGGCGAAGA CCCCCGCCAC CTGAACGCCG TGGCCGGCTG GCGCGAAGCG
CCGTTCTTTA CCGAGCGCGA GCGCGCTGCC CTGCGCTGGG CCGAGCTGGT CACCAACACG
CCGCACAGCG ATGCCAGCGA CGAAGAATTC GCCCGCCTGC GCACGCACTT CAGCGATGAA
GAGATCGCCG AACTGAGCTT TGTGATCGTC ACCATCAACA GCTGGAACCT GCTGAACGTG
AGCCTGCGCA ACCCGGTGCC GCTGAACGCG CCGTATGCTG CAGCGGCTTG A
|
|---|
| Protein sequence | MSQAPRIAYF QLAPKAFNNL LNLSNGLRRD LLGARLVDLV LLRVSQINGC AFCIDMHWSD
LMKMGEDPRH LNAVAGWREA PFFTERERAA LRWAELVTNT PHSDASDEEF ARLRTHFSDE
EIAELSFVIV TINSWNLLNV SLRNPVPLNA PYAAAA
|
|---|
| |