Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_0013 |
Symbol | |
ID | 8017636 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012856 |
Strand | + |
Start bp | 16501 |
End bp | 17235 |
Gene Length | 735 bp |
Protein Length | 244 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 644828797 |
Product | polar amino acid ABC transporter, inner membrane subunit |
Protein accession | YP_002979997 |
Protein GI | 241661637 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0765] ABC-type amino acid transport system, permease component |
TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.38894 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCTATC AATTCGACTT TGGCGCTGTC TTCAGTTACA GCGGCCAGCT CGCGCAGGGC GCGGCATTCA CGCTCGCGCT CACGGCGGCG GGCGCGGTGC TCGGTGGCGC CATCGGTATT GTCGGGGGTG TGTGCCGCGC CTGGCGCATC GCTCCGTTCA ATGCGCTGTT CAAGGTGTAT GTGGAGGGCA TTCGCAACAC GCCGTTCCTC GTGCAGTTGA TGTTCATGTT CTTCGGCTTG CCCTCGCTGG GCGTGCAGAT CAACGAATGG CAGGCGGCGC TGCTCACGGC GGTGGTCAAC CTGGGCGCTT ACATCACAGA GATCGTGCGT GCCGGCATTC AAGAAACGCC GCGCGGCCAG CTGGAAGCGG CCAACGCGCT GGCGATGAGC CGCTGGGCCA TCTTCCGGCA CGTGGTGCTG CGGCCCGCGC TGCAGAAGGT GTGGCCGGCG CTCAGCAGCC AGATCGTGAT CGTGATGCTG GGCACGTCGG TCGTGTCGCA GATTGCCGCG CAGGATCTGA CCTTTGCGGC CAACTTCATC CAGTCGCGCA ACTTCCGCGC GTTTGAAACC TACCTGGTGG TGACGGCGCT GTACTTTGCG CTGGCGCTGT TGCTGCGTCA GCTGCTGGCC TGGATCGGCC AGCGCTTTAT TGTCGGGCGC CGCGCGCCTG CGGTGTCCGC TGCACCGCTT GCTACTCCTG CCAACGCAGC CGCCTCCGTT GGAGACGCCG CATGA
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Protein sequence | MAYQFDFGAV FSYSGQLAQG AAFTLALTAA GAVLGGAIGI VGGVCRAWRI APFNALFKVY VEGIRNTPFL VQLMFMFFGL PSLGVQINEW QAALLTAVVN LGAYITEIVR AGIQETPRGQ LEAANALAMS RWAIFRHVVL RPALQKVWPA LSSQIVIVML GTSVVSQIAA QDLTFAANFI QSRNFRAFET YLVVTALYFA LALLLRQLLA WIGQRFIVGR RAPAVSAAPL ATPANAAASV GDAA
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