Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_5012 |
Symbol | |
ID | 8017439 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012855 |
Strand | - |
Start bp | 296869 |
End bp | 300036 |
Gene Length | 3168 bp |
Protein Length | 1055 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 644828700 |
Product | helicase domain protein |
Protein accession | YP_002979900 |
Protein GI | 241589875 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCTGGG CCAATGGCTT GCTGGGGATC CGATCAAAAG GATCTACAAC GGCTAAGGCT GGTTCGCTTG CCGGGCTTCA TGAAGCCCGG CAGGTCCACC AAAGCCAGTT CTTCACCACG GTGGCGCTGT CGCAGTTCTG TTGGCGCCTT GTGGAACCGA TGATGAATCG GATCGCGGAG GAAGAAGGCA TCGCTGAGGG AAAGGCGCGG AAGTTGAGCG TGCTGGATAA CAGCGTGGGC AGCGGTCGGT TGCTGCACTG GGCTAACCCT GAAATCCACT CCCTGTATGG GGTGGACGTC GACGAGGGGT GCATTGCCGC GCTTGGTGAA GCGGCAAGGG AGGCAGGGTT CACGTATGAG TTCATCCATA CGGGAATGGA GTCGATTCGG CCGAAGGATT TTGACTTCTG TCTGATCAAC CCGCCCTTCT CCATCAACCT CCAGAGCCCA TTCCTGGCGC CCTACCCGTG CACATCGTAC GGGGCCTTTG GTCCCAGCAC GAGCGCGCGG AGCGACGAAT ATGCGCTTTA CCAAGCGCTG AACGCAGCGA AGTGGGTGGT GGCGATACTG CCGTCGACTC TCGCCGACGA GGTTTATCTG AAGTCGGTAG ATGCGCATTT CCAGCATCCG TTCCGAAGGC TGCGGGCGAT GTACGACATG CCAGTGGATG TTTTCCGGGA GGAAAACGCC ACGGTGCGCG TAACGGTGGC ACTGTTCGAC CTTGCATTTC AAGCCGAGGC AGCACCGCGG CAACGCGTGA CCGACCTTTG CGCTGAAGTG GAAGTCCCGA CCTTGACGGG AGGCATGCGC CGCGAGCCGC GTCTGAAGCA TTTGGAATCG GACAAGTCGG GGCCCGCCAT CACCACACCG GTATCAGGCG ATCCCGCTGT TCGGGTGTGC CATGACGGAC GGTGGATCAA GCTCAAGTTC CAGTGTGGTT TGACAGAGGC AATGGTGCTC AACGCAATCT ACCGCGACCG CATCGCTGCC CATCGCCCAC ATGACGAACA CCGGTACCCG CGCGACGTGA AGTACGTTGG GCAAGGTGCC CTTGACCTGC AGATCCATCT GGCGCAGCCA GACCCGATGA GGAGCTTTTG GGACTTCATC GCGGTCATCG GCCGTGCCGG CGGAACTCCG GTTGTCGAAG CTGGGCTACT CCGCTACCTG CGGAGCCAGA CAAAGGCTAC GGCAAGGCAG AAGACGCCAT TCCGGCACAC CGTTTTGATG CCCGGCACGG GGTCCGGAAC AGAGGGGTCG ATGCAGGGGA CCGCCAAGAA GGATCATCTG GTAGATCCGA CGAAATGGGG GTCTGCTGTG ATCAAAGCAG GCACCACAGT CAGCTTCGTG GAGATCGAAC ACGGCCGGCA TCGTTTCGAG CACCTAGGGA AGCAATACGT CCTGCCGTAC GAGGACATCC TGGCGCGCTT CGATCTGATC CAAAAGGAGG CGGAGTCTGA ATGGAAAGTG GTCTACCCAG GCCTCGCCGT TCAGAATCCG AAGCTTGCAG AAATCTGGCG GGCTCGGATT CGCTCCCTTG GGATCGATGC TTGGCTGAAT CGCGGATACC AAATCGACGA TCTCGTGGAA TTGGCGATCA AGCGCGGTGG TGTTGTGGCC TGGGCTATGG CTCTAGGCAA AGCGCGAGCG GCGCTGGCAA TTGCCCTGCT TCTTGGGGGC AAGCATTCGC TGGTGGTACT CAAAGCGGCC CTTGTCGACG AGATGCTGAT CGAGATCCGC AAGATTAGTC TTGATGGCGA ACTCTGGCAG GTGATCGAGA CACCCACGCA ACTGCAGTCG CTGCGTCGGA TCAACATCAT TTCGGTGGAT CGCCTTAAAG CTCCAGTCGC ACCAGAGCAT CCACGCATGA CATACGCCAA GAAGTTGCGC CGGCGCGTCG GCACGATCAT TCCCGATGAG GCTCACTTCC TTGGGAACAT CGATACCGAT CAGACCAGCG CTGTTTGGCA GGTGTCGGCC AAACGCCGAT TCCCGCTCAC CGGTACGCCG GCGGGCAACT ATCCGCGTGA CTGCCACGGT CTATTGGCAT TCGCCGGGGG AGATGGCACG GCGTCACAGC CGTACGGGTA CCGCCGCTAC TACCTTGACC CCAGTCTGCG CCACTCCATG GCACTGGCTG AACGAGGCAT CGATCGGGTG CTGAACACGT TCTGTGAATT TGTGTGGGTC ACTCGTGAGT TCGAAGATGA ACTCAAGGGA GCCAAGCGAG AAGTGCCACG AATCGCCAAC CTTGCTGAAT ACCGCAGGAT GCTGGCACCG TGGATCAAAC GTCGCGTGGT GAAGGAACCG GACGTCGCTT CGTGCGTGTC CATTCCGGAT CCGACACATG AGACGCACCT GATCGAATTC GATACGGACC ATCTGCTGCA CTACCTGGTC GTGTCGGAGG ACTTCTCGAA GTGGTACCTG GAGGGGCTCG ATGAAGGGAA GCGAAACAAC CTCGTTACCA TACTGGCTCG CATCAAGGCT GTGGAGATTG CCAACAATTT TCCGCAGCAT CCGAAGGCGA CCAAGGGTTA TGCACCACTG ACGAGTAAGC AACGCTTCTG CATCGACAAG CTCGAGGAGC TCGTGGATCT GCGCAGGCGA CCGATCATGT TCACCGGCTA CCCGGGGAAT GCTGAGCTGG TTGCCCGTCA TCTGGCCAAG CGCCACATCG ATTCAGTGGT GATCCACGGC GGGAAGACGA TCAAACGTCG AAACGCTGAG TTCGAGGCGC GATTCCGGAA AGGAACGGTT CCAGTTGCGC TTGTGACGTA CGGCAGCATT GGGGAAGGTA CCAACATCCC GCAATGCAGC GACGTGCTTC TGGCTGACAA GAGCTGGTCC GCACGCAAGG AAAGTCAGGC GATTGCCCGG GCGCTGCGCG ATGAGAACGA GTGGGACGAA GTGAAGGTAC ATCACGCCCT CACCGAACAC TCAATCGATT CGTATATGCA GCAAGTAGTG TCCTATAAGG CCGACAGCTT CAACGCCGGC TTCGACTGGG GCACACCGAC CACGTTCAAT CAGGAATTCC TGCACATGGA CGTGATCTTC CGGCGATTCT GCAGTGACCT ATCCAAGCTG GCAGGCGTTC ACGCCCATGA CCTGCGCAAG TATCTCGAAA AGGAGGTGTC GCATGCTAAG CAGCGCATCG CAGCTTAA
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Protein sequence | MSWANGLLGI RSKGSTTAKA GSLAGLHEAR QVHQSQFFTT VALSQFCWRL VEPMMNRIAE EEGIAEGKAR KLSVLDNSVG SGRLLHWANP EIHSLYGVDV DEGCIAALGE AAREAGFTYE FIHTGMESIR PKDFDFCLIN PPFSINLQSP FLAPYPCTSY GAFGPSTSAR SDEYALYQAL NAAKWVVAIL PSTLADEVYL KSVDAHFQHP FRRLRAMYDM PVDVFREENA TVRVTVALFD LAFQAEAAPR QRVTDLCAEV EVPTLTGGMR REPRLKHLES DKSGPAITTP VSGDPAVRVC HDGRWIKLKF QCGLTEAMVL NAIYRDRIAA HRPHDEHRYP RDVKYVGQGA LDLQIHLAQP DPMRSFWDFI AVIGRAGGTP VVEAGLLRYL RSQTKATARQ KTPFRHTVLM PGTGSGTEGS MQGTAKKDHL VDPTKWGSAV IKAGTTVSFV EIEHGRHRFE HLGKQYVLPY EDILARFDLI QKEAESEWKV VYPGLAVQNP KLAEIWRARI RSLGIDAWLN RGYQIDDLVE LAIKRGGVVA WAMALGKARA ALAIALLLGG KHSLVVLKAA LVDEMLIEIR KISLDGELWQ VIETPTQLQS LRRINIISVD RLKAPVAPEH PRMTYAKKLR RRVGTIIPDE AHFLGNIDTD QTSAVWQVSA KRRFPLTGTP AGNYPRDCHG LLAFAGGDGT ASQPYGYRRY YLDPSLRHSM ALAERGIDRV LNTFCEFVWV TREFEDELKG AKREVPRIAN LAEYRRMLAP WIKRRVVKEP DVASCVSIPD PTHETHLIEF DTDHLLHYLV VSEDFSKWYL EGLDEGKRNN LVTILARIKA VEIANNFPQH PKATKGYAPL TSKQRFCIDK LEELVDLRRR PIMFTGYPGN AELVARHLAK RHIDSVVIHG GKTIKRRNAE FEARFRKGTV PVALVTYGSI GEGTNIPQCS DVLLADKSWS ARKESQAIAR ALRDENEWDE VKVHHALTEH SIDSYMQQVV SYKADSFNAG FDWGTPTTFN QEFLHMDVIF RRFCSDLSKL AGVHAHDLRK YLEKEVSHAK QRIAA
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