| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rleg_5638 |
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| Symbol | ligD |
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| ID | 8016864 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhizobium leguminosarum bv. trifolii WSM1325 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012853 |
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| Strand | - |
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| Start bp | 222642 |
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| End bp | 225290 |
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| Gene Length | 2649 bp |
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| Protein Length | 882 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 644827797 |
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| Product | ATP-dependent DNA ligase |
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| Protein accession | YP_002978997 |
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| Protein GI | 241518369 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGACA ATCTTTCGAA ATACCGCGCC AAGCGCGATT TCAAGAAGAC CGGCGAGCCG
AGCGGCGAGG CCCAGGTGAA GCCGTCGAAC CGCCGGCGGT TTGTGATCCA GAAGCACGAC
GCTACCCGGT TGCATTATGA CCTTCGGCTC GAACTCGACG GCGTCTTTAA ATCCTGGGCT
GTGACCAAGG GCCCGTCGCT CGACCCGCAC GACAAGCGGC TGGCCGTCGA AGTCGAAGAC
CATCCCTTGG ACTACGGGGA TTTCGAAGGC ACGATCCCGA AAGGCCAGTA TGGCGGCGGC
ACCGTGATGT TGTGGGACCG CGGCTACTGG GAGCTCGAGG GCAACAGGAC GCCGGAAGAA
GCGCTCGCTA GGGGCGATTT CAAGTTCAAG CTGGAGGGTA AGCGCCTCCA TGGCGGTTTC
GTTCTGGTGC GCATGCGCAA CGACCGCGAT GGCGGCAAAC GGACCAACTG GCTGCTGATC
AAGCATCATG ACGATTTCTC GGTCGAGGAG AACGGCGCGG CCATCTTGGA GGAAAACGAT
ACGTCCGTGG CGTCCGCGAG AACGATGGAG GCGATCGCAG CGGGAAAAGG CAGGAAGCCA
ACGCCATTCA TGATGCAGAA TGGCGACGTC GAGGCGGATG CGGTGTGGAA CAGCAATCAC
GTTTTCGCGG CCGAGGAGCG CAAAGCGGGC GTGAAGACTG CAAAAAAGCC GTCGGCCGGC
AAGCGTGCGA ACTCCACCAT GCCGGTTTTC GTCCCACCGC AGCTGTGCGA AACCCTGGCG
CGCCCGCCAT CTGCCGATGG CTGGATTCAT GAGATCAAAT TCGACGGCTA TCGCATCCAG
ATGCGAGTTG AGGATGGCGA GGCAACCCTC AAAACCCGCA AGGGTCTGGA CTGGACGGCC
AAATATCCGG CCATCGCCGC CTCAGCGTCC GCTCTTCCCG ACGCCATCAT TGATGGAGAG
ATCTGCGCGC TCGACGAAAC CGGCGCCCCG GATTTTGCTG CGCTCCAGGC GGCGCTCTCG
GAAGGAAAGA CCGATAATTT GGTCTACTTT GCATTCGACC TCCTCTTCGT GGGAGGCGAA
GATTTGCGCG AGCTGCCGCT CACAGAACGC AAGGAACGCT TGGCGACGTT CTTGTCGGAT
GCCGGCGAAG ATCCGCGTCT ACACTTCGTC GAGCATTTCG AAACCGGTGG CGACGCGGTT
CTCAGATCCG CCTGTCGTTT GTCGCTGGAG GGGATCGTCT CGAAACAGGC TGACGCACCT
TATCAATCGG GCCGCACCGA GACATGGGCC AAGTCGAAAT GCCGGGCAGG GCATGAAGTC
GTTATCGGCG CCTATGCGAA AACCAATGGC AAGTTCCGAT CACTGCTCGT CGGCGTCCAT
CGCGGCAACC ATTTTGTCTA TGTCGGCCGG GTCGGCACGG GTTATGGAGC GAAGGTCGTC
GACACGCTCT TGCCCAAGCT GCAGGCGATG GAGACATCGG AGTCGCCGTT CACCGGTATC
GGTGCGCCGA AGAAGAGCCC TGATATCGTT TGGCTAAAAC CAGAACTCGT CGCCGAGATC
GAGTTTGCCG GCTGGACGGC CGATGGCCAG GTGCGCCAAG CGGCGTTCAA GGGCTTGCGG
GAAGATAAGC CTGCGGCAGA AGTCGAGGCC GAGAAGCCGG CCTCACCAGC CAAAACCGAG
GTGCCCGATC CCGAGACTTC GAAACCGGCG CCTGCGCGTT TCCGCAAGGG CGCGAAGGTG
GAGGTGATGG GCGTGATGAT CTCCAGCCCC GACAAGCCGC TATGGCCGGA TGCCGGTGAC
GGAGAGCCGG TGACTAAGGT CGATCTGGCG CACTACCACG AAGCCGTCGG TTCCTGGTTG
ATCGACCATA TCAAGGGGCG GCCATGCTCA ATCATTCGCA CACCGGACGG CATTGGCGGA
GAGCAGTTCT TCCAGCGCCA TGCGATGCCG GGGACATCGA ACCTGCTGGA ACTGGTCACG
GTGTTTGGCG ACAAGAAGCC CTACCTACAG ATCGATCGCG TCGAGGGTCT TGCGGCAATC
GCCCAGATCG GCGGCGTCGA GCTGCATCCG TGGAACTGTG AGCCTAATCA GCCGGAAGTG
CCCGGCCGTC TGGTGTTTGA CCTCGATCCT GGACCTGATG TCGATTTCTC CACCGTCGTC
GCAGCGGCTC GTGAAATCCG CGACCGGCTG GAGGAGCTCG GGCTCGTCAG CTTCTGCAAG
ACGACGGGCG GCAAAGGACT GCACGTGGTG ACGCCGCTTG CTGTGCCGAA GAGCAAGAAA
CTCAGCTGGG ACATCGCGAA GGGTTTCGCC CATGATGTTT GCGAACAGAT GGCGCGCGAC
AATCCGGATC TTTACCTGAT CAAAATGGCC AAGAATCAGC GTGAGGGGCG CATCTTTCTC
GACTACCTGC GCAACGATCG CATGGCGACG GCTGTCGCAC CTTTGTCTCC ACGAGCGCGG
CCCGGCGCCG CCGTGTCGAT GCCGTTGACG TGGACGCAGG TAAAGTCTGA TCTCGACCCC
AAGCGGTTCA CGGTTCGCAC AGTTCCTGCG CTGCTTGCGA AAAGCGCCGC GTGGCAGGAT
TATTGCGATG GTCAGCGACC GCTTGAGCAG GCGATCAAGC GCCTCGGAAA ATTAAAGCAG
GCAGCGTGA
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| Protein sequence | MSDNLSKYRA KRDFKKTGEP SGEAQVKPSN RRRFVIQKHD ATRLHYDLRL ELDGVFKSWA
VTKGPSLDPH DKRLAVEVED HPLDYGDFEG TIPKGQYGGG TVMLWDRGYW ELEGNRTPEE
ALARGDFKFK LEGKRLHGGF VLVRMRNDRD GGKRTNWLLI KHHDDFSVEE NGAAILEEND
TSVASARTME AIAAGKGRKP TPFMMQNGDV EADAVWNSNH VFAAEERKAG VKTAKKPSAG
KRANSTMPVF VPPQLCETLA RPPSADGWIH EIKFDGYRIQ MRVEDGEATL KTRKGLDWTA
KYPAIAASAS ALPDAIIDGE ICALDETGAP DFAALQAALS EGKTDNLVYF AFDLLFVGGE
DLRELPLTER KERLATFLSD AGEDPRLHFV EHFETGGDAV LRSACRLSLE GIVSKQADAP
YQSGRTETWA KSKCRAGHEV VIGAYAKTNG KFRSLLVGVH RGNHFVYVGR VGTGYGAKVV
DTLLPKLQAM ETSESPFTGI GAPKKSPDIV WLKPELVAEI EFAGWTADGQ VRQAAFKGLR
EDKPAAEVEA EKPASPAKTE VPDPETSKPA PARFRKGAKV EVMGVMISSP DKPLWPDAGD
GEPVTKVDLA HYHEAVGSWL IDHIKGRPCS IIRTPDGIGG EQFFQRHAMP GTSNLLELVT
VFGDKKPYLQ IDRVEGLAAI AQIGGVELHP WNCEPNQPEV PGRLVFDLDP GPDVDFSTVV
AAAREIRDRL EELGLVSFCK TTGGKGLHVV TPLAVPKSKK LSWDIAKGFA HDVCEQMARD
NPDLYLIKMA KNQREGRIFL DYLRNDRMAT AVAPLSPRAR PGAAVSMPLT WTQVKSDLDP
KRFTVRTVPA LLAKSAAWQD YCDGQRPLEQ AIKRLGKLKQ AA
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