| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rleg_3349 |
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| Symbol | |
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| ID | 8014231 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhizobium leguminosarum bv. trifolii WSM1325 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012850 |
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| Strand | - |
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| Start bp | 3354350 |
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| End bp | 3356167 |
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| Gene Length | 1818 bp |
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| Protein Length | 605 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 644825908 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_002977135 |
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| Protein GI | 241206039 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.00304196 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGCAAGCTT CTAAGGCTGG GACCGCGTTG CCAGAGATCA AAGCCACACG ATCCGAACGG
GAGTTCCAGG ATCTTCTGCG TCGGCTCGAA CTCGCTCTCG ATGCATCCCA GATCGGTGTC
TGGGAGCACA GCATCGAGCA GGACGGGATC TTGTGGGATG CACAGATGCA TCGTCTCTAC
GAGACCGGCG AGACGTGCCG GCTGGTGCCG GCATCGCTTT GGTCGGATGC CATCCATCCC
GATGATCGCG AGCGGGCCGA ACGCGACTTC GAGCAGGCGA TAACGACGCG CGGCGCCTAT
AATTCGCAAT TTCGGATCGT GCTGCCGAGC GGTGAAATCC GCCATTTGCG TTCGCGCGCG
CATTTCTATG TCGATGCGGA GGGTCTGCCT TCCTTCATCG GCGCCGAATG GGATGTGACG
GCCGACATAC TGCTCAACGC GGAACTGGCG CGGCAAAAGG TGGTGGCCGA GGCGAGGGCG
CTGGCGCTCG AGGAAAGCAA TGCCCGCATC GAGCATGTCG CCGATCATGA CTATCTCACC
GGCCTGCCGA ACCGGCGCCT TCTCGACAAG CGGCTGGCGG AGTTGCCAGC CGACAAAAGC
ATCACGACGC TTGCCGTGCT GCATCTTGAC CTCGACCAGT TCAAGCAGAT TAACGACAGC
CACGGTCATG CCGCTGGCGA CGCCGTTCTC AGGGCCGCAG CACTTAGAAT CACCGCCGCC
ATTCCTGCAA ATGGCGTGGT CGCCCGCGTT GGCGGCGATG AATTCGTCAT CGTACTGGTC
AATTTCGCCG ATCTCACTGA GCTGAAGCTG ATCACCGAGG ACGTCCAGCG TCGGCTGCGG
AAGAAGATCC GCTTCGGCCA GGAGATGCTG CAATCCGGCG CCTCGATCGG CGTTTCCTGG
AGCGGCGATC GGCGTGCGCG CAACCTGCTG GCCGAATCCG ACCTGGCGCT CTACCAGGCC
AAGAAGCTCG GGCGCAACCG CGTCGAATTC TTCACGCGGC AATTGCAGGA GGATCTGCGC
TCCAAGCGTC GCCTCGCCGA AGAGTTGAAG CTTGGGCTGG AGCGCGGTGA GATCCTTCCC
TATTATCAGC TGCAGCTCGA CGCCCGGACG CGGGAGGTCA TCGGCTTCGA GGCGCTGGCG
CGCTGGAAAC ATCCGGAGAA GGGCGTGCTC GCTCCGGGGG TATTCCTGAA GATTGCCGAT
GAGCACGGAC TTGCGGCGGA GATCGACGCG GCGATCCTCA AAAGCGTTCT CGAAGACCGG
CTGTTCTGGC TGTTGCGCGG CCTTGCGGTT CCGCGCATCG CCGTCAATAT CTCGGCGTCG
CGGCTTGCCG ATCCGGCACT GCTCGACAAG CTGAGGAAGC TCGATATCCC GCCCGGCGTG
ATCGTCTTCG AACTGGTCGA AACGATTTTC CTCGACGACA GCGACGAAAA ACTGCTCGAT
CATATCGGCG GTATCAAGCA GATGGGCATC GACATCGAGA TTGACGACTT CGGATCCGGT
CATGCCTCGC TCATCGGTCT CGTCAAGCTG CGGCCGAAAC GGCTGAAGAT CGACCGGCAA
CTCGTCACCG AGGTCGTCAG CTCGGCCGAA CAGCGGCGCG TGGTGGGTTC GATCGTGGAA
ATCGCCAAGG CACTCGATGT CGAGGTGATC GCCGAGGGCA TCGAGACCGA GGCGCATGCC
GTCGTGCTGG CGCAACTCGG CTGCGACGGC CTGCAGGGCT ATGCGTTCGG TTATCCCGCA
CCGGCGGCGG AGACAGATCG TCTGTTCTCA TCGATGACGA GCCGAATCGA AAAGCAGAAG
ACCGCGATGG GCAACTGA
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| Protein sequence | MQASKAGTAL PEIKATRSER EFQDLLRRLE LALDASQIGV WEHSIEQDGI LWDAQMHRLY
ETGETCRLVP ASLWSDAIHP DDRERAERDF EQAITTRGAY NSQFRIVLPS GEIRHLRSRA
HFYVDAEGLP SFIGAEWDVT ADILLNAELA RQKVVAEARA LALEESNARI EHVADHDYLT
GLPNRRLLDK RLAELPADKS ITTLAVLHLD LDQFKQINDS HGHAAGDAVL RAAALRITAA
IPANGVVARV GGDEFVIVLV NFADLTELKL ITEDVQRRLR KKIRFGQEML QSGASIGVSW
SGDRRARNLL AESDLALYQA KKLGRNRVEF FTRQLQEDLR SKRRLAEELK LGLERGEILP
YYQLQLDART REVIGFEALA RWKHPEKGVL APGVFLKIAD EHGLAAEIDA AILKSVLEDR
LFWLLRGLAV PRIAVNISAS RLADPALLDK LRKLDIPPGV IVFELVETIF LDDSDEKLLD
HIGGIKQMGI DIEIDDFGSG HASLIGLVKL RPKRLKIDRQ LVTEVVSSAE QRRVVGSIVE
IAKALDVEVI AEGIETEAHA VVLAQLGCDG LQGYAFGYPA PAAETDRLFS SMTSRIEKQK
TAMGN
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