Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rleg_2397 |
Symbol | |
ID | 8013382 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhizobium leguminosarum bv. trifolii WSM1325 |
Kingdom | Bacteria |
Replicon accession | NC_012850 |
Strand | - |
Start bp | 2398215 |
End bp | 2399321 |
Gene Length | 1107 bp |
Protein Length | 368 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 644824978 |
Product | secretion protein HlyD family protein |
Protein accession | YP_002976208 |
Protein GI | 241205112 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.584067 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.00226725 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | GTGGTTTCCG AAAACTTGGA CGAGCCTGCC ATTTCCCCAA CGCCTCGGAA TCCACTCCGC AGGATAGCAC TCATCGTCCT CCTCCTTGCG CTCGTCCTGT TCGTCCTCTC CATCTTCATG GAGCGGCGCA CGCCGTCGAC CTCGCAGGCT CAGGTCCAAG CCTATATCGT CGGCATCGCG CCCGAAGTTA CCGGCCGGGT GGTGGAAGTC GGCGTCGCCG ACAACTCGCG CGTCGAGGCC AATCAGATTC TCTTTCGTAT CGATCCCGAG CGCTATGAAC TCGCGGTCAG TGAGGCCGAG GCGAGCCTTG CAAGTGTCGG CCAGTCAATG GGCGCCTCAA CGGCTGCTGT CGATGCGGCG CAGGCAAAGC TCGTAACGGC CCAAGTCGAT CGGGACAATC TTCGCGAACA AGCTGCGCGC GCCGCAGAGC TGCAAAAGAG GGGCGTGTAT TCCAAAGCGC GGGCTGATTC AACCAAATCG GCTTTCGGTC AGTCAGAGGC GGCCGTCACC GGTGCTGAGG CTGAGTTGGC CAAGGCCAAG GAGCAGCTCG GGCCGAGCGG AAATGACAAT CCGCAGCTCC GGGCAGCTCT GGCTGCGCTC GAAAAGGCAC GACTCGATCT GCTGCGGACC ACCGTTCAGG CACCTTCGGC CGGGGTCGTG ACCAACCTCC AACTTACAAC GGGTAAGGTT GTGTCGGCTG GACAGTCAGC CATGACCTTT ATCGATGTCG GCACGATCTG GATCACCGCC GCCTTCAAGG AGAACAGCCT CGAGAAGGTA GCCGTCGGCA ACCGGGCGGA AGTTCTTTTC GACGCGCTTC CCGGTCGGGT GTTTCCGGCG CAGGTCGAGA GCGTTGGTTT CGGTGTATCG CAAGGGAGCA CGGACCCGAA CACCGGATTG CCGACGATCC GGAGCGATAG CGGCTGGGTC CAGGAGCCGC AGCGGTTTCC GGTCCGCCTC ATCATCGAGG AGGCGCAGCG GCCCAAGGGC GGCGTACGCT ACGGCTCGCA GGCGACCGTC GTCATCTACA CCGGCGACAA CCCGGTCACC AATGCCTGGG GATCGCTCTG GATCCGCATC ATGTCGGTGC TGACCTATGT CCGCTGA
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Protein sequence | MVSENLDEPA ISPTPRNPLR RIALIVLLLA LVLFVLSIFM ERRTPSTSQA QVQAYIVGIA PEVTGRVVEV GVADNSRVEA NQILFRIDPE RYELAVSEAE ASLASVGQSM GASTAAVDAA QAKLVTAQVD RDNLREQAAR AAELQKRGVY SKARADSTKS AFGQSEAAVT GAEAELAKAK EQLGPSGNDN PQLRAALAAL EKARLDLLRT TVQAPSAGVV TNLQLTTGKV VSAGQSAMTF IDVGTIWITA AFKENSLEKV AVGNRAEVLF DALPGRVFPA QVESVGFGVS QGSTDPNTGL PTIRSDSGWV QEPQRFPVRL IIEEAQRPKG GVRYGSQATV VIYTGDNPVT NAWGSLWIRI MSVLTYVR
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