| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rleg_2120 |
|---|
| Symbol | |
|---|
| ID | 8013143 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhizobium leguminosarum bv. trifolii WSM1325 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012850 |
|---|
| Strand | + |
|---|
| Start bp | 2113712 |
|---|
| End bp | 2115277 |
|---|
| Gene Length | 1566 bp |
|---|
| Protein Length | 521 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 644824706 |
|---|
| Product | DEAD/DEAH box helicase domain protein |
|---|
| Protein accession | YP_002975936 |
|---|
| Protein GI | 241204840 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.308058 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.00839171 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGGAAACAG TTTTCCCTTT GACGACATTT GCTGACCTTG GCTTAAGCCA AAAAGTGCTA
TCCGCTGTTA CGGACGCGGG CTACACGATC CCCACGCCTA TTCAGGCGGG AGCCATCCCG
TTTGCGCTTG AGCGCCGCGA TATTTGCGGT ATCGCGCAGA CCGGCACTGG CAAGACGGCA
TCCTTCGTGC TGCCGATGCT GTCGCTTCTG GAGAAGGGCC GTGCGCGTGC GCGCATGCCC
CGCACGCTGA TTCTCGAACC GACGCGCGAA CTCGCTGCCC AGGTCGCCGA GAATTTCGAG
AAATACGGCA AGAACCATCG CCTTAACGTC GCCCTTCTGA TCGGCGGCGT TTCCTTCGAG
GACCAGGACC GCAAGCTCGA ACGCGGCGCC GATGTACTGA TCTGCACCCC CGGCCGCCTT
CTTGACCATT TCGAGCGCGG CAAGCTGCTG ATGAGCGGCG TCGAGATCCT CGTCATCGAC
GAGGCCGACC GCATGCTCGA TATGGGTTTC ATCCCCGATA TCGAGCGCAT CGCCAAGATG
ATCCCGTTCA CCCGCCAGAC GCTGTTCTTC TCGGCAACCA TGCCGTCGGA AATCCAGAAG
CTCGCCGACC GTTTCCTGCA GAATCCCGAA CGTATCGAGG TCGCAAAGCC GGCTTCCGCG
GCCGAGACCG TGACACAGCG TTTCGTCGCC TCCCACGGCA AGGATTACGA GAAGCGAGCG
GTTCTGCGAG AACTCGTCCG CGCCCAGACC GAGCTCAAGA ACGCCATCGT CTTCTGCAAC
CGCAAGAAGG ATGTCGCCGA TCTCTTCCGG TCGCTCGAGC GTCATGGCTT CTCGGTCGGC
GCCCTGCATG GCGACATGGA CCAGCGTTCC CGCACGATGA CGCTGCAAAG CTTCCGTGAC
GGCAATCTCC AGCTTCTGGT CGCTTCCGAC GTCGCCGCCC GCGGCCTCGA TATCCCTGAT
GTCAGCCACG TCTTCAATTT CGACGTGCCT ATTCATTCCG AGGATTACGT CCACCGCATC
GGCCGCACCG GCCGTGCCGG CCGCTCGGGT GCCGCCTTCA CGCTCGTCAC CAAGCGCGAC
ACTAAGTTCG TCGATGCCAT CGAGAAGCTG ATCGGCGAAA AGGTCGAATG GCTGAGCGGT
GACCTGACGT CGCTGCCGCC GCCGGCAGAA GACAGCCGGG ACAGCGAACG CCCGCGCCGC
AACGGCCGCG AGCGTGGCGC CAGAGATGGT GCAGGCCGAG ATCGCGCGCC GAGAGAGAAT
GGCGACAAGG ATCGTGGACG CGGACGAGGC AATCGCGCCG CCGCGAGTCA TAAATCTGAT
AACGACATAC AGGATAATGG CGTCGACGTG ATTGAAGCAG CACCAGTAAA GGCCGACATC
GTGAAGAACG AGCGCAAAGC AGAGCAGAAG CCGCAGAACA ACGCGCGCAA CAGTCGGCCT
TACCCGGCAA ACGACGACAG CCGCGACCGC CGCCGTCATC GCGACCACGA CGATGGCCCG
ACCCCGGTCG GCTTCGGCGA CGATATCCCC GCCTTCATGC TGATCGCCGG CAGCGCCAAG
GTCTAA
|
|---|
| Protein sequence | METVFPLTTF ADLGLSQKVL SAVTDAGYTI PTPIQAGAIP FALERRDICG IAQTGTGKTA
SFVLPMLSLL EKGRARARMP RTLILEPTRE LAAQVAENFE KYGKNHRLNV ALLIGGVSFE
DQDRKLERGA DVLICTPGRL LDHFERGKLL MSGVEILVID EADRMLDMGF IPDIERIAKM
IPFTRQTLFF SATMPSEIQK LADRFLQNPE RIEVAKPASA AETVTQRFVA SHGKDYEKRA
VLRELVRAQT ELKNAIVFCN RKKDVADLFR SLERHGFSVG ALHGDMDQRS RTMTLQSFRD
GNLQLLVASD VAARGLDIPD VSHVFNFDVP IHSEDYVHRI GRTGRAGRSG AAFTLVTKRD
TKFVDAIEKL IGEKVEWLSG DLTSLPPPAE DSRDSERPRR NGRERGARDG AGRDRAPREN
GDKDRGRGRG NRAAASHKSD NDIQDNGVDV IEAAPVKADI VKNERKAEQK PQNNARNSRP
YPANDDSRDR RRHRDHDDGP TPVGFGDDIP AFMLIAGSAK V
|
|---|
| |