Gene Rleg_1875 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRleg_1875 
Symbol 
ID8012927 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhizobium leguminosarum bv. trifolii WSM1325 
KingdomBacteria 
Replicon accessionNC_012850 
Strand
Start bp1859980 
End bp1860903 
Gene Length924 bp 
Protein Length307 aa 
Translation table11 
GC content61% 
IMG OID644824464 
Product5-dehydro-4-deoxyglucarate dehydratase 
Protein accessionYP_002975696 
Protein GI241204600 
COG category[M] Cell wall/membrane/envelope biogenesis
[E] Amino acid transport and metabolism 
COG ID[COG0329] Dihydrodipicolinate synthase/N-acetylneuraminate lyase 
TIGRFAM ID[TIGR03249] 5-dehydro-4-deoxyglucarate dehydratase 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.207996 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.131652 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACCCGA TTGAATTGAA GAAGGCCGTC GGTAGTGGTC TCCTGTCGTT TCCGGTTACG 
CACTTCGACG ATCAACTGAA ATTTGACGAA GCGAAGTACA GCCGCCATGT CGAGTGGCTT
GCAGGTTATG ACGCCGCTGC ACTGTTTGCC GCCGGCGGCA CCGGTGAATT CTTCTCGCTT
AATCCGGCCG AGATTCCGCA GGTGATCCGG GCCGCCAAGG CGTCGGCCGG CAAGACGCCG
ATCATTTCGG GAACCGGCTA CGGCACGTCG CTCGCAATCG AGATCGCAGT CGCGGCCGAG
AAGGCCGGCG CCGACGGACT GCTGCTGCTG CCGCCCTATC TGATGTTTGC CGAACAGGCG
GGTCTCATCG CCCACGTCAA GGCGGTCTGC CAATCGGTCG GCATCGGCGT CATCGTCTAT
AACCGCGACA ACGCCGTCCT GACCGCCGAC AGCATCGCGC GCCTGGCGGA GGAATGCCCG
AACCTGATCG GCTTCAAGGA CGGCGTCGGC GATGTCGACA AGGTGATCGA GATTACCACC
CTGCTTGGCG ATCGTCTCGT CTATGTCGGC GGCATGCCGA CCCACGAGGT TTATGCCCAG
GCCTATTTTG CCGCAGGCGT GACGACCTAT TCATCGGCCG TGTTCAACTT CGTACCAGCG
CTTGCCCAGC GCTTTTACGG CGCCTTGCGC ACCGGCGATC AGGCGACCGT CGATGAGATC
TTGAAGGGCT TCTTCTTCCC CTTCGTCGCC TTGCGCAATC GCAAGAAGGG ATATGCCGTC
TCGATCATCA AAGCCGGCCT TCGCGTCCTC GGGCAGAACC CAGGCCCCGT GCGCCCGCCT
CTGACGGATC TTTCCCAGGA TGAGCTCGCG CTGCTGGAAA AGATCGTCCA GGCCAACGGC
GTCACACGGA TCGCGGCGGA ATAA
 
Protein sequence
MNPIELKKAV GSGLLSFPVT HFDDQLKFDE AKYSRHVEWL AGYDAAALFA AGGTGEFFSL 
NPAEIPQVIR AAKASAGKTP IISGTGYGTS LAIEIAVAAE KAGADGLLLL PPYLMFAEQA
GLIAHVKAVC QSVGIGVIVY NRDNAVLTAD SIARLAEECP NLIGFKDGVG DVDKVIEITT
LLGDRLVYVG GMPTHEVYAQ AYFAAGVTTY SSAVFNFVPA LAQRFYGALR TGDQATVDEI
LKGFFFPFVA LRNRKKGYAV SIIKAGLRVL GQNPGPVRPP LTDLSQDELA LLEKIVQANG
VTRIAAE