| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rleg_1548 |
|---|
| Symbol | |
|---|
| ID | 8012629 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhizobium leguminosarum bv. trifolii WSM1325 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012850 |
|---|
| Strand | - |
|---|
| Start bp | 1527737 |
|---|
| End bp | 1528285 |
|---|
| Gene Length | 549 bp |
|---|
| Protein Length | 182 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 644824134 |
|---|
| Product | alkylhydroperoxidase like protein, AhpD family |
|---|
| Protein accession | YP_002975376 |
|---|
| Protein GI | 241204280 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2128] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR00778] alkylhydroperoxidase AhpD family core domain
[TIGR01926] uncharacterized peroxidase-related enzyme |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.00182572 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.0175445 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCGAA TTCCAATTCC CGCGACACTC GAAGCGGCGC CTGAGGCTTC CAAGTCGACG
CTGGAGGCGA TCAAGAAGCA GATCGGCGCG CTGCCCAATG TATTCCGCAT GATGTCGACA
AGTCCCGCCG TGCTTGAAGC CTACGCAGGT CTCAACGGAG CGCTCGGCAG GGGCAGGCTC
GACAAGAAGA TCCGCGAGCG CATCGCGCTG GCGATCGCCC AGAAGAACGG CTGCGAGTAT
TGCCTCGCCG CTCATACCTA CACCGGCACT CATGTTACCA AGCTCAGTCT TGAGGAAATC
GCTGCGGCCC GCCGCGGCGG ATCCTCCGAC GCCAGGGCCG ACGCCGCCGT TAAGTTTGCG
GTCAGGGTCG CCGAAGCCAG GGGCGGCGTT TCCGAACAGG AACTGGAAGG ACTGAAGGCG
GCCGGCTTCG ATGACGGCGA GCTTCTGGAG ATCGTCGCCC ACGTCGCGGC GAACACCTTC
ACGAACTACA TGAACGAAGT CTTCAAGACC GACGTCGACT TCCCGAAGGT CGAGCGTGAA
GCCGCCTGA
|
|---|
| Protein sequence | MARIPIPATL EAAPEASKST LEAIKKQIGA LPNVFRMMST SPAVLEAYAG LNGALGRGRL
DKKIRERIAL AIAQKNGCEY CLAAHTYTGT HVTKLSLEEI AAARRGGSSD ARADAAVKFA
VRVAEARGGV SEQELEGLKA AGFDDGELLE IVAHVAANTF TNYMNEVFKT DVDFPKVERE
AA
|
|---|
| |