Gene Rpic12D_5353 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_5353 
Symbol 
ID8007850 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012849 
Strand
Start bp242784 
End bp243857 
Gene Length1074 bp 
Protein Length357 aa 
Translation table11 
GC content63% 
IMG OID644822561 
Productlipoprotein signal peptidase 
Protein accessionYP_002973821 
Protein GI241114346 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0597] Lipoprotein signal peptidase 
TIGRFAM ID[TIGR00077] lipoprotein signal peptidase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00779044 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATTGGA AGTTCCTGTT GTACGACTGG GGCGGCTGGA ATGTCGCGCT GTTCCAGGCC 
ATCAATTCCG GGACGCCGGG CGCGCTGGAC CCGTGGGCGT GGCTTTTTAG TCTGGTTGGG
AGCTATTGGA CCGCGCCGCT CATGCTGCTG GGCCTGTGGT GGTGGTCCAC GTCTGCATCG
AATCCGACTC GCGCATGCGC TGTGCGGCAC CGTCTGGTCA CGTTCGGCGT GGCCTTTGCG
CTCGCCTTGC TGGCCGCTTC CGCGTTGAAG TGGGGGCTGG ATTTCCCGCG GCCGCCCGCA
GTGCTTGGCA CTCTCGTGCA CGTCATCGGC GTAGCGGAAC TGCGCTACAG CCTGCCCAGC
GGACACGCGA CCTACGCGGC ACTGGTTGTG GGCGCACTCT GGCCCTTGAT GGGACGTCGA
GGCCATCTCG CCTTGGTGTG CTACGCCGCT CTCGTCGGGT GGTCACGCAT TGCGGCGGGG
ATGCATTTTC CGGCGGATGT ACTTGCGGGC TGGACCCTCG GGGCTGGCTG CGTCGTTGTC
GCTGGCCACC TGGTGCCGTT GCTTGCTGCA ACATGGAGGA ACCGTGGCAC ACCGAACGCG
GTCTGGTATG GCGTTGCGGC GTGTTGCTTC ATGGCCGATC AAGCTGCCAA GTTCGCCATC
ACGCGGATGT TTGCCTATGG TGAGCGGGTT GAGATCACGT CAACGTTCAA CCTCGTGTAC
GTGCGCAATC CTGGCGCGGC CTTCAGTTTC CTCGCCAATG AGGCCGGCTG GCAGCGCTAC
CTTTTTATTG GCTTGGGCCT GGCTGTCTCA GCGTGGTTGG CCCACACGTT GCGCAAGCGG
TTGTCTCGTA TGGAAGCTTT GGCGTACAGC TTGATCCTTG GCGGTGCAGC GGGAAATCTC
ACAGACCGCG TCTGGCGTGG TCAGGTCGTG GACTTTCTGG ACCTGCATTG GATGCAACTC
CACTGGCCGG CATTCAACCT TGCTGATATG GCTATCTCCG CGGGCGCGGC ATCGCTGATG
CTGGCAGTGT TGACGCAACG GCATGGCATT ACGGCGAAAA CCCTGTCCGG CTGA
 
Protein sequence
MNWKFLLYDW GGWNVALFQA INSGTPGALD PWAWLFSLVG SYWTAPLMLL GLWWWSTSAS 
NPTRACAVRH RLVTFGVAFA LALLAASALK WGLDFPRPPA VLGTLVHVIG VAELRYSLPS
GHATYAALVV GALWPLMGRR GHLALVCYAA LVGWSRIAAG MHFPADVLAG WTLGAGCVVV
AGHLVPLLAA TWRNRGTPNA VWYGVAACCF MADQAAKFAI TRMFAYGERV EITSTFNLVY
VRNPGAAFSF LANEAGWQRY LFIGLGLAVS AWLAHTLRKR LSRMEALAYS LILGGAAGNL
TDRVWRGQVV DFLDLHWMQL HWPAFNLADM AISAGAASLM LAVLTQRHGI TAKTLSG