Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_5353 |
Symbol | |
ID | 8007850 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012849 |
Strand | + |
Start bp | 242784 |
End bp | 243857 |
Gene Length | 1074 bp |
Protein Length | 357 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 644822561 |
Product | lipoprotein signal peptidase |
Protein accession | YP_002973821 |
Protein GI | 241114346 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0597] Lipoprotein signal peptidase |
TIGRFAM ID | [TIGR00077] lipoprotein signal peptidase |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00779044 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATTGGA AGTTCCTGTT GTACGACTGG GGCGGCTGGA ATGTCGCGCT GTTCCAGGCC ATCAATTCCG GGACGCCGGG CGCGCTGGAC CCGTGGGCGT GGCTTTTTAG TCTGGTTGGG AGCTATTGGA CCGCGCCGCT CATGCTGCTG GGCCTGTGGT GGTGGTCCAC GTCTGCATCG AATCCGACTC GCGCATGCGC TGTGCGGCAC CGTCTGGTCA CGTTCGGCGT GGCCTTTGCG CTCGCCTTGC TGGCCGCTTC CGCGTTGAAG TGGGGGCTGG ATTTCCCGCG GCCGCCCGCA GTGCTTGGCA CTCTCGTGCA CGTCATCGGC GTAGCGGAAC TGCGCTACAG CCTGCCCAGC GGACACGCGA CCTACGCGGC ACTGGTTGTG GGCGCACTCT GGCCCTTGAT GGGACGTCGA GGCCATCTCG CCTTGGTGTG CTACGCCGCT CTCGTCGGGT GGTCACGCAT TGCGGCGGGG ATGCATTTTC CGGCGGATGT ACTTGCGGGC TGGACCCTCG GGGCTGGCTG CGTCGTTGTC GCTGGCCACC TGGTGCCGTT GCTTGCTGCA ACATGGAGGA ACCGTGGCAC ACCGAACGCG GTCTGGTATG GCGTTGCGGC GTGTTGCTTC ATGGCCGATC AAGCTGCCAA GTTCGCCATC ACGCGGATGT TTGCCTATGG TGAGCGGGTT GAGATCACGT CAACGTTCAA CCTCGTGTAC GTGCGCAATC CTGGCGCGGC CTTCAGTTTC CTCGCCAATG AGGCCGGCTG GCAGCGCTAC CTTTTTATTG GCTTGGGCCT GGCTGTCTCA GCGTGGTTGG CCCACACGTT GCGCAAGCGG TTGTCTCGTA TGGAAGCTTT GGCGTACAGC TTGATCCTTG GCGGTGCAGC GGGAAATCTC ACAGACCGCG TCTGGCGTGG TCAGGTCGTG GACTTTCTGG ACCTGCATTG GATGCAACTC CACTGGCCGG CATTCAACCT TGCTGATATG GCTATCTCCG CGGGCGCGGC ATCGCTGATG CTGGCAGTGT TGACGCAACG GCATGGCATT ACGGCGAAAA CCCTGTCCGG CTGA
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Protein sequence | MNWKFLLYDW GGWNVALFQA INSGTPGALD PWAWLFSLVG SYWTAPLMLL GLWWWSTSAS NPTRACAVRH RLVTFGVAFA LALLAASALK WGLDFPRPPA VLGTLVHVIG VAELRYSLPS GHATYAALVV GALWPLMGRR GHLALVCYAA LVGWSRIAAG MHFPADVLAG WTLGAGCVVV AGHLVPLLAA TWRNRGTPNA VWYGVAACCF MADQAAKFAI TRMFAYGERV EITSTFNLVY VRNPGAAFSF LANEAGWQRY LFIGLGLAVS AWLAHTLRKR LSRMEALAYS LILGGAAGNL TDRVWRGQVV DFLDLHWMQL HWPAFNLADM AISAGAASLM LAVLTQRHGI TAKTLSG
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