Gene Rpic12D_5183 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_5183 
Symbol 
ID8007763 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012849 
Strand
Start bp81016 
End bp82872 
Gene Length1857 bp 
Protein Length618 aa 
Translation table11 
GC content61% 
IMG OID644822395 
Producthypothetical protein 
Protein accessionYP_002973655 
Protein GI241114180 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3505] Type IV secretory pathway, VirD4 components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACTACG TGAGCCACTT TCGCCCGATC TTCGAGGCCC GCGCGGCCGT CGGTTGGCTG 
ATCGGTTTGA TCTTGCTCCC CCTGTCCGGC ATGCCCCACG CATGGGCGTT CGCGGTCATT
TGTGCTCTGT TCCTCGTGGC GCGCGCCTAC CAGGTGCGCA AGGCGCTGGC CTTTCGCATG
TCGATTTCGA CGCGTTGGCT CACCCTCATT CAGATCGACG TGCTGCTGCG CACGAGTGCC
CGCATGCGAG CCGACCTTGA CGCGATGTAC TTCGGTAACG GCTTCGAATG GACGCAGCGC
CATTGCCAGA TCGCGCACGA CATCTTGCGC ATGCCGTCCA CCGAAATTCC GGGTCTTCCG
AAGTGGCTCC CGCCGAAAGT CGCCAAGCGA ATCGAGACCG CGTTTGCGCC GCCCAACAGC
GTCCCCGACA CGGCCCCGCA GGGCAAGTCC TGGATCCACG GGATGGAACC CAACAAGATC
GAAGTGCCCC TGCACTATAA GGCGCTCGGC GGTCACACGG CCGTGAGCGG CACCACGGGT
GCCGGGAAAA CCAAGACCTA CGAGCTGATT GCGACACAGG TCATTCACAG CCCCAACAAA
GACGTCCTCA TTATTGTCGA CCCGAAGAAC GACAAGGACT TCAAGAAGCG CGTCGAGCGT
GAATGCAAGC GTGCCGGTCG CAAGTTCCTG TACTGGAAGC AGGCTGCGCC GTCCGAATCG
ATTCGGATGA ATCCGGTTGA GAATTGGTCG CAGCCGTCGG AAATCGCCAG CCGCGTCTCC
CAACTGATGG AAGAAGGCCC TTTCCGCGAC TTTGCCTTCC TCTTCATCGA CCGCGCAGTC
AAGGGTGAGC TGTACGTCGG CGACAAGCCG AACCTCCGCT CGATCCTGAA TTACGCACAG
TCCGGCATCA ATGGTCTGCT CGATCGATGC CTGCGCCGAT TCTTTCCGGA AGCGGGCATG
CTCGACTGGG AAGACGAGGC CAGAGGCTTT CTGCAGCGCA TCGCCCAGAA GGGCGGGGTG
GATCCTCTGC AGGGGATGGT TCAGCTCTAC GTCGACAACT TCGCAAAGAA GGGCCTCGGC
CACGAGACGA TCGACGGCCT GGTGGCCACC TTCGTGCACG ATCGCGAGCA CTACATGCGG
ATCATCGCCT CGGCGCTGCC GCTGCTGCAG ATGCTGGCTA CCGGCGAAAC CGGTCTCATG
CTCGCGCCGA AGGCCGACGA TTTCACGGAT GACCGTGAGA TCTGGGATAT CGAGCGCGTG
ATCAAGCAGA AGGCCGTCCT GTACGTTGGC CTGGATTCGA TGTCCAACAG CATCGTCGCC
AAGGCGATCG CTTCCATGCT GCTGGCCGAC GTGGCTTCTG TCGCGGGCGC CATCTACAAC
TTCTACGAGA CGCCACCCGA CATCGTCTTG CTGGTCGATG AGGTGGCCGA AGCCATCAAC
GAGCAGGTGA TCCAGATTCT CAACAAAGGC CGTGGCGCCG GCTTCCGGTC GTTCGTGGCG
TTCCAAAGCC GCTCCGACCT GGAAGCCAAG CTTGGCAGTG CTGCAAAGAT GCTGCAGGTG
CTCGGCAACC TGAACAACCA GATCATCCTG CGCCTTGAGG ATACCGACAC CGCGCAATGG
TTCTCCGACA AGGTGGGCGA GACAGCCATT CGCAACATCG TGGTGTCGAG CAGCGCAAGC
ACAGGTTCCG AGTCGCACGT CGGGGAATTC AGCGGCTCCG TATCTCGCTC GACGCAGTTG
GAGAAGGCGC CGCTGATTCC GCCACGCCTC ATCACCGAAC TGCCGAACCT CCAGTACTTC
ATGCGCATCT CCGGTGGCTC GGTCTACCAA GGTCGCATTC CCATCATCCA AGGATAA
 
Protein sequence
MNYVSHFRPI FEARAAVGWL IGLILLPLSG MPHAWAFAVI CALFLVARAY QVRKALAFRM 
SISTRWLTLI QIDVLLRTSA RMRADLDAMY FGNGFEWTQR HCQIAHDILR MPSTEIPGLP
KWLPPKVAKR IETAFAPPNS VPDTAPQGKS WIHGMEPNKI EVPLHYKALG GHTAVSGTTG
AGKTKTYELI ATQVIHSPNK DVLIIVDPKN DKDFKKRVER ECKRAGRKFL YWKQAAPSES
IRMNPVENWS QPSEIASRVS QLMEEGPFRD FAFLFIDRAV KGELYVGDKP NLRSILNYAQ
SGINGLLDRC LRRFFPEAGM LDWEDEARGF LQRIAQKGGV DPLQGMVQLY VDNFAKKGLG
HETIDGLVAT FVHDREHYMR IIASALPLLQ MLATGETGLM LAPKADDFTD DREIWDIERV
IKQKAVLYVG LDSMSNSIVA KAIASMLLAD VASVAGAIYN FYETPPDIVL LVDEVAEAIN
EQVIQILNKG RGAGFRSFVA FQSRSDLEAK LGSAAKMLQV LGNLNNQIIL RLEDTDTAQW
FSDKVGETAI RNIVVSSSAS TGSESHVGEF SGSVSRSTQL EKAPLIPPRL ITELPNLQYF
MRISGGSVYQ GRIPIIQG