Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | GWCH70_3351 |
Symbol | |
ID | 7977109 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacillus sp. WCH70 |
Kingdom | Bacteria |
Replicon accession | NC_012793 |
Strand | - |
Start bp | 3379393 |
End bp | 3380220 |
Gene Length | 828 bp |
Protein Length | 275 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 644800118 |
Product | spermidine synthase |
Protein accession | YP_002951257 |
Protein GI | 239828633 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0421] Spermidine synthase |
TIGRFAM ID | [TIGR00417] spermidine synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.000337487 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAATTAT GGTTTACGGA AAAGCAGACA GAGCATTTTG GCATTACAGC GAGAATTAAA CGAACTTTAC ATACAGAGCA AACCCCATTT CAAAAGCTGG ACATGGTGGA GACAGTAGAG TTCGGCAATA TGCTTATTTT AGACGGAATG GTGATGACAA CGCAAAAAGA TGAGTTTGTG TACCACGAAA TGGTTGCACA CGTTCCGCTC TTCACCCACC CGAATCCGGA AAATGTGCTT GTCGTTGGCG GCGGCGATGG CGGTGTTATT CGTGAAGTGT TAAAACACCC GAGCGTAAAA AAAGTGACAT TAGTGGAGAT TGATGGAAAA GTGATTGAAT GCTCAAAAAA ATTTCTTCCG GAAATTGCTG GAAAGTTAGA TGACCCGCGT GTAGAAGTAA AAGTGGATGA CGGTTTTATG CATATTGCGA AAAGTGAAAA CGAATATGAC GTCATTATGG TCGATTCGAC AGAGCCAGTC GGCCCGGCTG TCAACTTATT TACAAAAGGT TTTTATGCTG GAATCGCAAA GGCTTTGAAA GAAGACGGCA TTTTTGTCGC ACAAACAGAC AACCCTTGGT TTAAAGCAGA CTTAATCCGT AATGTTTATC GCGATGTTCG CGAAATTTTC CCGATTACGC GTCTATACAC TGCCAATATC CCGACATATC CAAGCGGTCT ATGGACGTTT ACGATCGGCT CGAAAAAATA CGATCCGCTT GAAGTAAGCG ATGAACGCTT CCACGATATT GAGACGAAAT ATTACACAAA AGAGCTTCAT AAAGCTTGCT TTGTTCTGCC GAAATTTGTC GCTGATTTAT TGAAGTAA
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Protein sequence | MELWFTEKQT EHFGITARIK RTLHTEQTPF QKLDMVETVE FGNMLILDGM VMTTQKDEFV YHEMVAHVPL FTHPNPENVL VVGGGDGGVI REVLKHPSVK KVTLVEIDGK VIECSKKFLP EIAGKLDDPR VEVKVDDGFM HIAKSENEYD VIMVDSTEPV GPAVNLFTKG FYAGIAKALK EDGIFVAQTD NPWFKADLIR NVYRDVREIF PITRLYTANI PTYPSGLWTF TIGSKKYDPL EVSDERFHDI ETKYYTKELH KACFVLPKFV ADLLK
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