Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | GWCH70_1138 |
Symbol | |
ID | 7977619 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacillus sp. WCH70 |
Kingdom | Bacteria |
Replicon accession | NC_012793 |
Strand | + |
Start bp | 1185743 |
End bp | 1186507 |
Gene Length | 765 bp |
Protein Length | 254 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 644798091 |
Product | RNA polymerase sigma factor SigD |
Protein accession | YP_002949264 |
Protein GI | 239826640 |
COG category | [K] Transcription |
COG ID | [COG1191] DNA-directed RNA polymerase specialized sigma subunit |
TIGRFAM ID | [TIGR02479] RNA polymerase sigma factor, FliA/WhiG family [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.000368739 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCGAACG TTTTAACGAG CGAAGAACGC AAATATTGGG ATCGTTGGAT ATATCACCGT GACCCGCAAG CCGGAGATAA GCTCGTGCAA ACATATATGC CGCTTGTTCA TTATCATGTT CAACGAATAG CCGCGTCGTT GCCAAAAACT ATAAGTAAAC AAGAATTAAT AAGTCTTGGA TTAATGGGGC TTTACGACGC GCTCGAAAAG TTTGATCCCT CCCGTGATTT AAAATTTGAT ACGTACGCCT CATTTCGGAT TCGCGGCGCC ATTTTCGATG GGCTGCGCAA AGAAGATTGG CTTCCGCGCA GCGTAAGGGA AAAGGCGAAA AAAATTGAGG AAACGATCGA AAAGCTGGAG CAGCGGTATA TGCGGTCTGT TACAGCAAAA GAAGTTGCCG ATGAACTAGG GATCACAGAA GAGGAAGTAT ATATGGCAGT AAATGAGAAC TTTTTTGCCA ACGTCTTATC TTTTCAACAT GTTATTACGG AAAACAAGGA AGAAGAAAAC GCGCTTCTAG CCATTCGTGA TGAAAAAACA CCTTCTCCGG AGGAAGAAGT TTTAAAGCAG GAATTGTATG AGAAATTGGC AGAAGTAATC CAGCAGCTAA GTGAAAAAGA GCAGCTTGTT ATTAGTTTGT TTTATAAAGA AGAACTTACT TTTACCGAAA TTGGAGAAAT TTTAGGACTT TCCACATCAA GAATTTCCCA GCTTCATTCA AAAGCCATTT TTAAGCTGCG CAAAATTCTA GAACAAGCGC TTTAG
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Protein sequence | MANVLTSEER KYWDRWIYHR DPQAGDKLVQ TYMPLVHYHV QRIAASLPKT ISKQELISLG LMGLYDALEK FDPSRDLKFD TYASFRIRGA IFDGLRKEDW LPRSVREKAK KIEETIEKLE QRYMRSVTAK EVADELGITE EEVYMAVNEN FFANVLSFQH VITENKEEEN ALLAIRDEKT PSPEEEVLKQ ELYEKLAEVI QQLSEKEQLV ISLFYKEELT FTEIGEILGL STSRISQLHS KAIFKLRKIL EQAL
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