Gene GWCH70_0271 details

Gene Information

• Locus tag: GWCH70_0271
• Symbol: ligA
• ID: 7976137
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Geobacillus sp. WCH70
• Kingdom: Bacteria
• Replicon accession: NC_012793
• Strand: +
• Start bp: 306821
• End bp: 308833
• Gene Length: 2013 bp
• Protein Length: 670 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 644797266
• Product: NAD-dependent DNA ligase LigA
• Protein accession: YP_002948466
• Protein GI: 239825842
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II)
• TIGRFAM ID: [TIGR00575] DNA ligase, NAD-dependent

Plasmid Coverage information

• Num covering plasmid clones: 29
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGACCGAC AAGCTGCGAT GAAACGAATC GAAGAGCTTC GAGAGCTTTT AAATAAATAC 
AATTATGAAT ACTATGTTCT GGACCGTCCG TCTGTACCGG ATGCGGAATA TGATCGGCTG 
ATGCAAGAGC TCATCGCATT AGAAGAACAA TATCCGGATT TAAAAACGAA AGACTCTCCG 
TCGCAACGCG TGGGCGGGCA GGCGTTAGAT GCGTTTCAAA AAGTGGAACA TCGCACGCCG 
ATGCTAAGCC TTGCGAACGC GTTTAACGAA GGTGATTTGC GCGATTTTGA CCGCCGTGTG 
CGTCAAGAAG TCGGCGATGA TGTCGCCTAT GTGTGCGAGC TGAAAATCGA TGGGCTGGCT 
GTTTCCGTCC GCTACGAAGA CGGCTATTTT GTCCAAGGAG CGACACGCGG CGACGGGGTG 
ACCGGCGAAG ATATTACGGA GAACTTAAAA ACGATTCGTT CCTTGCCGCT TCGTCTGAAC 
GAACCCGTGA CATTAGAAGC GCGCGGCGAA GCCTACATGC CGAAAGCGTC GTTTGAGAGA 
TTGAACGAAC AGCGACGCAA TCGCGGGGAA GAGCTGTTTG CCAATCCGCG CAACGCCGCC 
GCAGGTTCTT TGCGTCAGTT GGATCCGAAA ATCGCCGCAT CGCGTCACCT GGATTTATTT 
GTATACAGTC TCGCCAACGC GGAAGAATTA GGAATTGATT CTCATAGCGC GGCGCTCGAT 
TATTTGCAAC AGCTTGGGTT TAAAACAAAC CCGGAACGCC GCCGCTGTGC TAATATCGAT 
GAAGTCATTC AATTTGTGAA TGAATGGCAT GAAAAACGCT CGCATCTACC TTATGAAATC 
GATGGGATTG TAGTGAAGGT GGATTCATTT GAGCAGCAAA AACAACTAGG TGCGACCGCG 
AAAAGTCCGC GTTGGGCCGT TGCTTATAAA TTCCCGGCTG AGGAAGTGGT AACGAAACTG 
ATTGGCATCG AATTAAGCGT CGGACGCACA GGAGTCGTTA CTCCGACAGC GATTTTAGAG 
CCGGTACGTG TAGCAGGTAC AACGGTACAA CGCGCCACCC TTCATAATGA GGATTTTATT 
CGCCAGAAAG ATATCCGCAT TGGTGATTCG GTCATCATCA AAAAAGCGGG GGATATTATT 
CCAGAAGTAG TGAATGTCGT GCCAGACCGG CGGACGGGAG AAGAAGTGCC GTTTGTCATG 
CCGACGCATT GCCCGGAATG TGCAAGTGAA CTAGTTCGCT TCGATGGTGA AGTGGCGCTT 
CGTTGTATTA ATCCGAAATG TCCAGCGCAA ATTCGCGAAG GCTTGATTCA TTTCGTATCA 
CGTCAAGCGA TGAACATCGA GGGACTTGGC GAAAAGGTCA TCTCCCAGCT GTTCCGTGAA 
GGTCTCATCC ATGACGTTGC CGATCTTTAT CGATTGACGA AGGAACAGTT AATCCGTTTA 
GAACGCATGG GGGAAAAATC GGCAACCAAT TTACTCCGTG CCATTGAAGC GTCCAAACAA 
AATTCGCTAG AACGTCTTCT CTTCGGCCTT GGCATTCGCC ATGTTGGCGC AAAAGCAGCG 
AAAGTGTTAG CGGAACATTT TGGAACAATG GACCGTCTGC AAACAGCGAC AAAAGAAGAA 
CTAATGGCGA TTCACGAGAT CGGCGAAAAA ATGGCTGATT CGATTGTCAC GTATTTTGCG 
AAACCGGAAG TAAAAGAACT TCTAAACGAA CTGCGCGCTT ACGGTGTCAA CATGGAATAC 
AAGGGCCCGA AAACGCCAAA ACCTGGCGAT GTTCATTCAT ATTTTGCAGG AAAAACAGTT 
GTATTAACAG GAAAACTCGA ATCATTGTCG CGCAATGAGG CAAAAGAAAA AATTGAACAG 
CTTGGCGGCA AAGTCACTGG CAGTGTGAGC AAAAATACAG ATTTAGTCAT TGCCGGAGCA 
GATGCAGGCT CGAAGCTTGC GAAAGCACAG CAGCTTAACA TCGAGATTTG GGATGAAGAG 
AGATTTCTTC AAGAAATTGA ACAAAATAAG TAG 

 

Protein sequence

MDRQAAMKRI EELRELLNKY NYEYYVLDRP SVPDAEYDRL MQELIALEEQ YPDLKTKDSP 
SQRVGGQALD AFQKVEHRTP MLSLANAFNE GDLRDFDRRV RQEVGDDVAY VCELKIDGLA 
VSVRYEDGYF VQGATRGDGV TGEDITENLK TIRSLPLRLN EPVTLEARGE AYMPKASFER 
LNEQRRNRGE ELFANPRNAA AGSLRQLDPK IAASRHLDLF VYSLANAEEL GIDSHSAALD 
YLQQLGFKTN PERRRCANID EVIQFVNEWH EKRSHLPYEI DGIVVKVDSF EQQKQLGATA 
KSPRWAVAYK FPAEEVVTKL IGIELSVGRT GVVTPTAILE PVRVAGTTVQ RATLHNEDFI 
RQKDIRIGDS VIIKKAGDII PEVVNVVPDR RTGEEVPFVM PTHCPECASE LVRFDGEVAL 
RCINPKCPAQ IREGLIHFVS RQAMNIEGLG EKVISQLFRE GLIHDVADLY RLTKEQLIRL 
ERMGEKSATN LLRAIEASKQ NSLERLLFGL GIRHVGAKAA KVLAEHFGTM DRLQTATKEE 
LMAIHEIGEK MADSIVTYFA KPEVKELLNE LRAYGVNMEY KGPKTPKPGD VHSYFAGKTV 
VLTGKLESLS RNEAKEKIEQ LGGKVTGSVS KNTDLVIAGA DAGSKLAKAQ QLNIEIWDEE 
RFLQEIEQNK