| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6367 |
|---|
| Symbol | |
|---|
| ID | 7975689 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | + |
|---|
| Start bp | 1115839 |
|---|
| End bp | 1116603 |
|---|
| Gene Length | 765 bp |
|---|
| Protein Length | 254 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644796934 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002948193 |
|---|
| Protein GI | 239821008 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1540] Uncharacterized proteins, homologs of lactam utilization protein B |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0512992 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACATCG ACCTGAACGC AGACCTCGGC GAAGGCTTCG GACCCTGGCG CATGGGCGAG
GACGAGGCGC TGCTCGACAT CGTTTCTTCC GCCAACGTGG CCTGCGGCTT CCATGCGGGC
GATCCGGTCA TCATGGACCG CACCGTGCGC CTGGCGCTGG CGCGGGGCGT CGACGTGGGG
GCGCATGTGG GCTTTCCCGA CCTGCTCGGC TTCGGCCGCC GGCCGATGCA GATCGAGCCG
AAGGAGCTCG TTGCCTACGT TCTCTATCAG CTGAGCGCGC TGGACGGCAT GGCGCGCACC
GCCGGCCACC GCATGACGCA CATGAGCTTT CACGGCGCGC TCGGCAACAT GGCCGCGGCC
GACGCCGCGC TGGCCGAGCC GCTGGTGCGC GCGGTGGCGG ATTTCGATCC GATGCTCATC
GTCAGCACTT CCGCCAGCCG CGCCATCGAG GACGCGGCCG CGCGCTGCGG CCTGCGCGTG
CGCACCACCT TCCTGGCCGA CCGCGCCTGC GGCGACGACG GCCTGCTGGT GCCGCGCAAG
CTGCCCGGTT CGGTGATCCA CGACCAGGGC GCGGTGCTGG CGCGCGTGCG CCAGCTGCTG
GAGGAGGGCA CGGTCACCAG CCACAGCGGC AAGAAGATCC CGATGCGCGC GCATTCGATC
CTGCTGCACG GCGACACGCC CGGTGCGGTG GAGCTGGCGC GCGCGGTGCG CAGCGTGGTC
GAGCAGGCGG GGCGCGTGGT GCCCATCTCG AAGCAGCCGG ACTAG
|
|---|
| Protein sequence | MDIDLNADLG EGFGPWRMGE DEALLDIVSS ANVACGFHAG DPVIMDRTVR LALARGVDVG
AHVGFPDLLG FGRRPMQIEP KELVAYVLYQ LSALDGMART AGHRMTHMSF HGALGNMAAA
DAALAEPLVR AVADFDPMLI VSTSASRAIE DAAARCGLRV RTTFLADRAC GDDGLLVPRK
LPGSVIHDQG AVLARVRQLL EEGTVTSHSG KKIPMRAHSI LLHGDTPGAV ELARAVRSVV
EQAGRVVPIS KQPD
|
|---|
| |