Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_6356 |
Symbol | |
ID | 7975678 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012792 |
Strand | + |
Start bp | 1105376 |
End bp | 1107067 |
Gene Length | 1692 bp |
Protein Length | 563 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644796923 |
Product | Polypeptide-transport-associated domain protein ShlB-type |
Protein accession | YP_002948182 |
Protein GI | 239820997 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2831] Hemolysin activation/secretion protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCGCTAT TCGCGTTGGC GCAGCAAGCC ACCACCCCCC AACCTTTCGT CGAGCAGCAA CGCCAACAGG AACGCGAACG GGCCCTGCGC GAGCAGAACG AGCGCACGGT CGACCAGCGG CTGCAGGCTG CGCCGCCCGC GCCTACACAG CGCATCCCTG AATCCGAAGC CCCGTGCTTT CGGATCGACC GCGTATTGCT AGTCGGCGAG CAGGCCGAGG CCTTCCATTG GGCGGTGGCC GATCTGTCCG GCCCCGAGGG CAACGATTCA CCGCTGGGTC GGTGCCTTGG CACCGCCGGC GTCAACGTGG TCCTGGCCCG CGCCCAGCAG GCCATCATCG CGCGCGGGTT CGTCACCACC CGCGTACTTG CGGCGCCGCA GGACCTGTCC ACCGGCACCC TGACCCTGTC GCTGGTGCCC GGGCGCATCG CGGCCATCCG GACCACGCCG GATTCTTCAT CCACGCTGCT GGGCAGCGGT GCCTTGCTGG GTTCCGCCAT TCCCGCCCGC CCGGGCGACC TGCTGAACCT GCGCGACATC GAGCAGGGCC TCGAGAACCT CAAGCGCGCG CCCACCGCCG AGGCCGACAT CCAGATCGAA CCTTCGACCG CCCCCGATGC CAAGCCGGGC GACAGCGACC TGGTGGTCAA GTACGTGCAG GCCAAGAAGT GGCGCGTCAC CCTGAGCCTG GACGACAGCG GCACCGAGGC CACCGGCCGC TATCAGGCCG GCGCCACGGT GTCGCTGGAC AACCCCTTGG GCCTGAACGA CCTGTTCTAC GTCAGCGCCA ACCACAACCT CAATGGCCAT GTCTTCAGCG ACCCGGCCAA GGGCACCGAA GGCCAGACGG TGCACTACTC GCTGCCCTAC GGCTATTGGA TGCTGGGCTT CACCGCCTCC AACAGCCAGT ACCACCAAAG AGTGGCCGGG CTGAACCAGG ACTACGTCTA CGCGGGCAAG ACCAACAACG CCGAGGTCAA GCTCTCGCGC CTGGTCTACC GCGACCAGAG TCGCAAGACC ACGGTCGCCC TCAAGGGTTT CCGGCGCGAA TCGCGCAACT TCGTGGACGA CACCGAGGTC GAGGTGCAGC ACCGGGTGGT CGGGGGCTGG GAGCTCGGGC TGAACCACAA GGAGTTCATC GGCGATGCGA CGCTGGAAGG CACGCTCGCC TACAAGCATG GCACGGGCGG CTTCGGGTCG ATCGCAGCGC CGGAGGAGGC GTTCGGCGAA GGCACCTCGC GCATGCGGCT GTACACGGCC GAGGTGAGCC TGAACGCGCC GTTCAAGCTG GGCGACCAGA AGCTGCGCTA CTCGGGCCTG GTGCGCGCGC AGTGGAACCG CACGCCGCTC ACGCCGCAGG ACCGCTTCGC CATCGGCGGG CGCTACACGG TGCGTGGCTT CGATGGCGAG ACCAGCCTGA TGGGCGAGCG CGGCTGGCTG ATCCGCAACG ACATCGGCTG GGCCATGGGG TCGAGCGGGG CGGAGCTGTA TGTCGGTGCC GACTACGGGC ATGTTGGCGG GCGCTCCACC GCGGACCTGC TGGGCCGCAG CTTGGCGGGT GCGGTCATCG GGGTGCGGGG GCAGTGGAGC AAGCTCAGCT ATGACTTCTT CATGGGGGCG CCGATCCGCA AGCCTGAGGG CTATCGCACG GCCAAGACCA CCTTCGGCTT CAATCTCAAT GCGAGCTTTT GA
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Protein sequence | MPLFALAQQA TTPQPFVEQQ RQQERERALR EQNERTVDQR LQAAPPAPTQ RIPESEAPCF RIDRVLLVGE QAEAFHWAVA DLSGPEGNDS PLGRCLGTAG VNVVLARAQQ AIIARGFVTT RVLAAPQDLS TGTLTLSLVP GRIAAIRTTP DSSSTLLGSG ALLGSAIPAR PGDLLNLRDI EQGLENLKRA PTAEADIQIE PSTAPDAKPG DSDLVVKYVQ AKKWRVTLSL DDSGTEATGR YQAGATVSLD NPLGLNDLFY VSANHNLNGH VFSDPAKGTE GQTVHYSLPY GYWMLGFTAS NSQYHQRVAG LNQDYVYAGK TNNAEVKLSR LVYRDQSRKT TVALKGFRRE SRNFVDDTEV EVQHRVVGGW ELGLNHKEFI GDATLEGTLA YKHGTGGFGS IAAPEEAFGE GTSRMRLYTA EVSLNAPFKL GDQKLRYSGL VRAQWNRTPL TPQDRFAIGG RYTVRGFDGE TSLMGERGWL IRNDIGWAMG SSGAELYVGA DYGHVGGRST ADLLGRSLAG AVIGVRGQWS KLSYDFFMGA PIRKPEGYRT AKTTFGFNLN ASF
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