Gene Vapar_6356 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_6356 
Symbol 
ID7975678 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand
Start bp1105376 
End bp1107067 
Gene Length1692 bp 
Protein Length563 aa 
Translation table11 
GC content68% 
IMG OID644796923 
ProductPolypeptide-transport-associated domain protein ShlB-type 
Protein accessionYP_002948182 
Protein GI239820997 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG2831] Hemolysin activation/secretion protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCGCTAT TCGCGTTGGC GCAGCAAGCC ACCACCCCCC AACCTTTCGT CGAGCAGCAA 
CGCCAACAGG AACGCGAACG GGCCCTGCGC GAGCAGAACG AGCGCACGGT CGACCAGCGG
CTGCAGGCTG CGCCGCCCGC GCCTACACAG CGCATCCCTG AATCCGAAGC CCCGTGCTTT
CGGATCGACC GCGTATTGCT AGTCGGCGAG CAGGCCGAGG CCTTCCATTG GGCGGTGGCC
GATCTGTCCG GCCCCGAGGG CAACGATTCA CCGCTGGGTC GGTGCCTTGG CACCGCCGGC
GTCAACGTGG TCCTGGCCCG CGCCCAGCAG GCCATCATCG CGCGCGGGTT CGTCACCACC
CGCGTACTTG CGGCGCCGCA GGACCTGTCC ACCGGCACCC TGACCCTGTC GCTGGTGCCC
GGGCGCATCG CGGCCATCCG GACCACGCCG GATTCTTCAT CCACGCTGCT GGGCAGCGGT
GCCTTGCTGG GTTCCGCCAT TCCCGCCCGC CCGGGCGACC TGCTGAACCT GCGCGACATC
GAGCAGGGCC TCGAGAACCT CAAGCGCGCG CCCACCGCCG AGGCCGACAT CCAGATCGAA
CCTTCGACCG CCCCCGATGC CAAGCCGGGC GACAGCGACC TGGTGGTCAA GTACGTGCAG
GCCAAGAAGT GGCGCGTCAC CCTGAGCCTG GACGACAGCG GCACCGAGGC CACCGGCCGC
TATCAGGCCG GCGCCACGGT GTCGCTGGAC AACCCCTTGG GCCTGAACGA CCTGTTCTAC
GTCAGCGCCA ACCACAACCT CAATGGCCAT GTCTTCAGCG ACCCGGCCAA GGGCACCGAA
GGCCAGACGG TGCACTACTC GCTGCCCTAC GGCTATTGGA TGCTGGGCTT CACCGCCTCC
AACAGCCAGT ACCACCAAAG AGTGGCCGGG CTGAACCAGG ACTACGTCTA CGCGGGCAAG
ACCAACAACG CCGAGGTCAA GCTCTCGCGC CTGGTCTACC GCGACCAGAG TCGCAAGACC
ACGGTCGCCC TCAAGGGTTT CCGGCGCGAA TCGCGCAACT TCGTGGACGA CACCGAGGTC
GAGGTGCAGC ACCGGGTGGT CGGGGGCTGG GAGCTCGGGC TGAACCACAA GGAGTTCATC
GGCGATGCGA CGCTGGAAGG CACGCTCGCC TACAAGCATG GCACGGGCGG CTTCGGGTCG
ATCGCAGCGC CGGAGGAGGC GTTCGGCGAA GGCACCTCGC GCATGCGGCT GTACACGGCC
GAGGTGAGCC TGAACGCGCC GTTCAAGCTG GGCGACCAGA AGCTGCGCTA CTCGGGCCTG
GTGCGCGCGC AGTGGAACCG CACGCCGCTC ACGCCGCAGG ACCGCTTCGC CATCGGCGGG
CGCTACACGG TGCGTGGCTT CGATGGCGAG ACCAGCCTGA TGGGCGAGCG CGGCTGGCTG
ATCCGCAACG ACATCGGCTG GGCCATGGGG TCGAGCGGGG CGGAGCTGTA TGTCGGTGCC
GACTACGGGC ATGTTGGCGG GCGCTCCACC GCGGACCTGC TGGGCCGCAG CTTGGCGGGT
GCGGTCATCG GGGTGCGGGG GCAGTGGAGC AAGCTCAGCT ATGACTTCTT CATGGGGGCG
CCGATCCGCA AGCCTGAGGG CTATCGCACG GCCAAGACCA CCTTCGGCTT CAATCTCAAT
GCGAGCTTTT GA
 
Protein sequence
MPLFALAQQA TTPQPFVEQQ RQQERERALR EQNERTVDQR LQAAPPAPTQ RIPESEAPCF 
RIDRVLLVGE QAEAFHWAVA DLSGPEGNDS PLGRCLGTAG VNVVLARAQQ AIIARGFVTT
RVLAAPQDLS TGTLTLSLVP GRIAAIRTTP DSSSTLLGSG ALLGSAIPAR PGDLLNLRDI
EQGLENLKRA PTAEADIQIE PSTAPDAKPG DSDLVVKYVQ AKKWRVTLSL DDSGTEATGR
YQAGATVSLD NPLGLNDLFY VSANHNLNGH VFSDPAKGTE GQTVHYSLPY GYWMLGFTAS
NSQYHQRVAG LNQDYVYAGK TNNAEVKLSR LVYRDQSRKT TVALKGFRRE SRNFVDDTEV
EVQHRVVGGW ELGLNHKEFI GDATLEGTLA YKHGTGGFGS IAAPEEAFGE GTSRMRLYTA
EVSLNAPFKL GDQKLRYSGL VRAQWNRTPL TPQDRFAIGG RYTVRGFDGE TSLMGERGWL
IRNDIGWAMG SSGAELYVGA DYGHVGGRST ADLLGRSLAG AVIGVRGQWS KLSYDFFMGA
PIRKPEGYRT AKTTFGFNLN ASF