| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6349 |
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| Symbol | |
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| ID | 7975671 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 1085078 |
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| End bp | 1086481 |
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| Gene Length | 1404 bp |
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| Protein Length | 467 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644796917 |
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| Product | Putative protein involved in formation of curli polymers-like protein |
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| Protein accession | YP_002948176 |
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| Protein GI | 239820991 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1462] Uncharacterized protein involved in formation of curli polymers |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCACAC TCAAGTCGAT CCGCGCACCG GCGCGCCGAA AAGCGGCCAG CCGCAGCCTG
CTGGCCGCTG CCGCCGCAAT GAGCCTGGCC GGTTGCGTCA CCGCACCTCA GCAGCGCATG
GCACCGAACG AGGCACCGAT TGTCCTAGGC CCCGCGGTGC GCGAGAACGT CACACCCATG
GAGGTCGTGC TGGCCTGCTT CGGCGACCAT GTGGCCGCCA CCCAGCGCCA GCCCATCGTC
ATCACAGTTG GCGACGTCAA GGACTACACC GGCAAATACA GCATCAACGA GGGCAACGCG
ATCACGCAGG GCGGGGCGCT CATGGTCTAT TCGGCGCTCG GCAAGCTCGG CGGCGCGGTG
CAGGCGGCCG AACGCTTCGA CCCTGTGATC GCGGAGCGCG AACTCGGCTA TGCCGACCGG
CGCCAGCTCG GCGACGGGCG GACGCACCAG CTCGCAGGCC CCAACGGGGG GCAGACAGTG
CCGTGGCTGC CCTATTTCGG CGGATCGATC AACAAGTCCG ACTACTTCAT CGTCGGCGGG
ATCACCGAAC TCAACTACAA CATCCACTCG GGCGGCGGCG AGATCGGCGT GAACCAGATC
GGCGTGAAGG CGCGCACCTT CAGCCAGTCG GTGGGTGTGG ACCTGCGCAT CGTCGACACC
AAGACGCTGA TGATTGTGAA GACCATCAGC CTGACCAAGC AGTTCAATGG CTACGAAGTC
GGCTTCAACG TCTTCCGATT CTTCGGCAGC AAGCTGTACG ACATCGACGT GGGCGCGAAA
GGCCAGGAGC CTGTGCAGAT GGGCGTGCGC GCTGCGCTGG AGGAGGGCGT GGTGCGCCTC
GTGGCAGCAG TCGCGAAGAT CGATCCCAAG CCCTGCTTGA GCATGCGCCT GTCCAACGAG
TTGCAGCTCA CGCCAGCCGA GGAACTGCGC AAGGTGAGCA ACCCGCTTGT CGATGCGGCG
GGTGCGCCTG TGCTGCAGGG CGAGGCGGTC AATGCCGCCA GCCAGACCGG TGCCACCCTG
TCGGGCTCGA ATGTGCAGAT TCCGTTCGAA TTCGGAGCTG CTGCACTCAC GGGCGGCACC
CTCAACCTGC TCGACCAGAT TGCCGCCGCC GCCGCCAAGG GCACGGCCGA GGTCGTGCTG
GTGGCGCGCG ACACCGAGAA CTGGGACGCG GGCAAGCGGG ACATGCTGAC CGACCAGCGC
ATCGGCGTGG TCACCTCGGC ATTGGCTTCG CGAGGCATTG CGCCGGGCGC CGTAAGCGTC
ACATGGCGAC CCGACAAGGC AGACACATCG ATCCATCGCG ATGGTCCCGG CCTTCAGGAG
GTAGCCAAGC TCCGCGTCCA AGGCGCGGGT AGGGGCGGAC CGGACAAGCC GGCCCGCGAG
AAGAACGCCA CGGGAGGGAA ATAG
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| Protein sequence | MITLKSIRAP ARRKAASRSL LAAAAAMSLA GCVTAPQQRM APNEAPIVLG PAVRENVTPM
EVVLACFGDH VAATQRQPIV ITVGDVKDYT GKYSINEGNA ITQGGALMVY SALGKLGGAV
QAAERFDPVI AERELGYADR RQLGDGRTHQ LAGPNGGQTV PWLPYFGGSI NKSDYFIVGG
ITELNYNIHS GGGEIGVNQI GVKARTFSQS VGVDLRIVDT KTLMIVKTIS LTKQFNGYEV
GFNVFRFFGS KLYDIDVGAK GQEPVQMGVR AALEEGVVRL VAAVAKIDPK PCLSMRLSNE
LQLTPAEELR KVSNPLVDAA GAPVLQGEAV NAASQTGATL SGSNVQIPFE FGAAALTGGT
LNLLDQIAAA AAKGTAEVVL VARDTENWDA GKRDMLTDQR IGVVTSALAS RGIAPGAVSV
TWRPDKADTS IHRDGPGLQE VAKLRVQGAG RGGPDKPARE KNATGGK
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