| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6324 |
|---|
| Symbol | |
|---|
| ID | 7975646 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | + |
|---|
| Start bp | 1061796 |
|---|
| End bp | 1062980 |
|---|
| Gene Length | 1185 bp |
|---|
| Protein Length | 394 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644796893 |
|---|
| Product | oxidoreductase FAD/NAD(P)-binding domain protein |
|---|
| Protein accession | YP_002948152 |
|---|
| Protein GI | 239820967 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1017] Hemoglobin-like flavoprotein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.441228 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCCCGC AAAACATCGC CATCGTCAAA GCCACCGTTC CCGCGCTCCA GGCGCACGGA
GAGGCCATCA CCAGCCACTT CTACCGGATC ATGTTCGAGA GCCATCCGGA GGTGAAGGCC
TTCTTCAACG AGGCGCACCA GGCCGCCGGC AGCCAGGCCC GCGCACTGGC GGGCGCGGTG
CTGGCCTATG CCACGCACAT CGACCGGCTC GAAGAGATTG CAGGCGCGCT GCCGCGCATC
ATCCAGAAGC ACGCCGCGCT GGGCGTGCTG CCCGAGCACT ACCCGATCGT CGGCGGCTGC
CTGCTGCAGG CCATCAAGGA CGTGCTCGGC GAGGCCGCGA CCGACGAGAC CATCGCGGCC
TGGGCCGAGG CCTACCAATC GCTCGCGGCG CTGCTGATCG CTGCGGAGGA AGAGGTCTAC
CGCGCCAACG CCGCGCAGAC CGGCGGCTGG CGCGGCGAGC GCGAGTTCCG CGTGGCGCGC
CGCGAGCAGG AGAGCGACGT CATCACCTCC TTCTACCTGG AGCCGACCGA CGGCGGCCCG
CTGCTCGCGT TCTCGCCCGG CCAGTACCTC ACGCTGGTGC TGAACATCGA CGGCGAGCCG
CTGCGGCGCA ACTACTCGCT GTCCGATGCG CCGGGCAAGC CCTTCTACCG CATCAGCGTC
AAGCAGGAAG AGGGCGGCCG CGCATCGAAC TGGCTGCACG AGAAGGCCGG GGTCGGCACC
GTCTTGCGTG TGCAGGCGCC TTGCGGCGAC TTCGTGCTGC AGCCCGCGGG CGAGCGCGTG
CGGCCGCTGG TGCTGGTGAC AGGCGGCGTG GGCATCACGC CGGCCATGAG CATGCTCGAG
TCGGTGGCGC ACACCGGCCG GCCGGTGCAC TTCATCCACG CCGCGCGGCA TGGCGGCGCC
CATGCGTTCC GCTCGCGCGT CGATGCGCTG GCCGCCCGGC ATGCCAACGT GAAGCCGCTC
TACGTCTACG ACGCGCCGCG CGAATCCGAC CGGCCGCATG CCACCGGCTT CGTCACGCGC
GAGCTGCTCG CGCAGCAACT GCCGGCCGAC CGCGACGTCG ACCTCTACCT CCTCGGCCCC
AAGCCCTTCA TGAAGGCGGT GTATGCGAGC GGCCTGGCGC TGGGCGTGCC CAAGCAGCAG
CTGCGCTACG AGTTCTTCGG TCCGCTGGAG GCGCTGGAAG CATGA
|
|---|
| Protein sequence | MTPQNIAIVK ATVPALQAHG EAITSHFYRI MFESHPEVKA FFNEAHQAAG SQARALAGAV
LAYATHIDRL EEIAGALPRI IQKHAALGVL PEHYPIVGGC LLQAIKDVLG EAATDETIAA
WAEAYQSLAA LLIAAEEEVY RANAAQTGGW RGEREFRVAR REQESDVITS FYLEPTDGGP
LLAFSPGQYL TLVLNIDGEP LRRNYSLSDA PGKPFYRISV KQEEGGRASN WLHEKAGVGT
VLRVQAPCGD FVLQPAGERV RPLVLVTGGV GITPAMSMLE SVAHTGRPVH FIHAARHGGA
HAFRSRVDAL AARHANVKPL YVYDAPRESD RPHATGFVTR ELLAQQLPAD RDVDLYLLGP
KPFMKAVYAS GLALGVPKQQ LRYEFFGPLE ALEA
|
|---|
| |