| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6299 |
|---|
| Symbol | |
|---|
| ID | 7975621 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | - |
|---|
| Start bp | 1035700 |
|---|
| End bp | 1038846 |
|---|
| Gene Length | 3147 bp |
|---|
| Protein Length | 1048 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644796869 |
|---|
| Product | heavy metal efflux pump, CzcA family |
|---|
| Protein accession | YP_002948128 |
|---|
| Protein GI | 239820943 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3696] Putative silver efflux pump |
|---|
| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCGCCG CCCTGATCCG CTGGTCGGTC GGCAACCGCT TCCTGGTGCT GATCGCGACC
CTGTTCCTGG TGGCCGCGGG GGGGTGGTCG GTGGCGCATA CGCCGCTCGA TGCCCTGCCC
GATCTCTCGG ACACGCAGGT CATCATCCGC ACGCCCTACC CCGGAAAAGC GCCCCAGGTG
GTCGAGGACC TGGTCACCTA TCCGCTCACC ACCACCATGC TCAGCGTGCC CGGCGCCAAG
ACCGTGCGCG GCTATTCGTT CTTCGGCGAC TCGTTCGTCT ATGTGCTGTT CGACGACAAG
ACCGATCCGT ACTGGGCGCG CTCGCGCGTG GTGGAGTACC TCAACCAGGT GCAGGCCAGG
TTGCCCGCAG GCGCGAGCGC CTCGCTCGGC CCCGACGCGA CGGGCGTGGG CTGGGTCTAC
GAGTACGCGC TGGTCGACCG CACGGGCACG CGCGACATCG GCCAGCTGCG CGCGCTCAAC
GACTGGTTCC TCAAGTTCGA GCTGAAGACC GTGCCCGACG TGGCCGAGGT GGCCAGCATC
GGCGGCATGG TGCGGCAGTA CCAGGTGGTG CTCGACCCCG ACCGCATGCG CGCACTCGGC
ATCACGCAGG CGGCAGTGGT GGAGGCCCTG CAGAAGGCCA ACCAGGCCTC GGGCGGCTCG
GTGGTGGAGC TTGCCGAGGC GGAGTACATG GTGCGCTCGC GCGGCTACCT GCGCTCGCTC
GATGATTTCC GGACCATCCC GCTCGCGGTG ACCGGCGCCA CGCCGGTGCT GCTGCGCGAC
GTGGCCACCG TGCAGATCGG TCCCGAGATG CGCCGCGGCA TCGCCGAGCT GGACGGCGAA
GGCGAAGTGG CCGGCGGCGT GGTCGTCATG CGCTCGGGCA AGAACGCGCG CACGGCCATC
GAGGCCGTCA AGGCGAAGCT CGAGGCGCTC AAGCCGGGCC TGCCGCCGGG CGTGGAGATC
GTGCCCACCT ACGACCGCTC GCTGCTGATC GACCGCGCGG TGCAGAACCT GCGCTCCAAG
CTCATCGAGG AGTTCATCGT GGTGGCGCTG GTCTGCGCGG TGTTCCTGTT CCACCTGCGT
TCGGCGCTGG TGGCGGTGGT GGCACTGCCC ATCGGCGTGC TGGCGGCGTT CATCGTCATG
CACTGGCAAG GGGTCAACGC CAACATCATG TCGCTGGGCG GCATCGCGAT CGCCATCGGC
GCGATGGTGG ACGGCGCGAT CGTCATGGTG GAGAACGTGC ACAAGCACAT CGAGGCCTTC
GAGGCCGCGC AGGGCCGGCC GCCCGCGGTG GCCGAGCGCT GGCGGCTGGT GGCCGATGCG
TCCGTCGAGG TGGGGCCGGC GCTGTTCTTC TCGCTGCTGG TGATCACGCT GTCCTTCGTG
CCGGTGTTCT CGCTCGAGGC GCAGGAGGGG CGGCTGTTCT CGCCGCTGGC CTTCACCAAG
ACCTACGCCA TGGCGGCCGC GGCGGGCCTG TCGGTCACGC TGATTCCGGT GCTCATGGGC
TATCTGGTCC GCGGGCGCAT TCCGCATGAA GCTTCCAACC CGGTGAACCG CTTGCTCATG
GCGGCCTACC GGCCCGCGCT GGAACTGGTG CTGCGCTTTC CCAAGGGAAC GCTCTTCGTT
GCCGCCGTGC TGCTGGCCCT CACCGCGGTG CCGATGATGC GGCTCGGCGG CGAGTTCATG
CCGCCGCTGG ACGAAGGCGA CCTGCTCTAC ATGCCGTCGG CGCTGCCCGG GCTCTCGGTG
TCGAAGGCGT CCCAGCTGCT GCAGCAGACC GACCGGCTGA TCAAGACGGT GCCCGAGGTC
GAGCGCGTGT TCGGCAAGGC GGGACGCGCG GACACGGCCA CCGATCCAGC GCCGCTCGAG
ATGTTCGAGA CCACCATCCA GTTCAAGCCT CGGGCGCAAT GGCGCGCGGG CATGACGGCC
GACAGGCTGG TCGAGGAACT GGACCGTGCC GTCAAGGTGC CGGGCCTCAG CAACGTGTGG
GTGCCGCCGA TCCGCAACCG CATCGACATG CTGGCCACGG GCATCAAGAG CCCCGTCGGC
ATCAAGGTGG CCGGGGCGGA CCTGGCCACC ATCGATGCGC TGACCACCCA GATCGAGGCA
GCGGTCAAGG GCGTTCCCGG CGTGTCGTCG GCCCTGGCCG AGCGGCTCAC CGGCGGGCGC
TACATCGATG TCGACGTCGA CCGGCTCGCG ACAGCGCGCC ATGGCCTCTC GGTGGCGGAC
GTGCAGGCCG TGGTGTCCAC GGCCATCGGC GGCGACAACG TGGGCGAAGT CATCCAGGGG
CGCGAGCGCT ATCCGATCAA CCTGCGCTAT CCGCGCGAGG TCCGCGACTC GCTCGATCGC
CTGCGGCAGC TGCCCTTCGT CACGGCCAGG GGCGCGCAAC TGCTGCTGGG CGATGTCGCC
AACATCCGCA TCGAGGACGG TCCGCCGATG CTGCGCAGCG AGAACGCGCG GCTGTCGGGC
TGGGTCTATG TGGACGTGCG CGGGCGCGAC CTGCGCTCCG CCGTCACCGA CATGCAGGCA
TCTGTCGGCC GCGCCGTGAA GATGCCCGCG GGCTACGCGG TGTCATGGTC CGGGCAGTTC
GAATACCTGG AGCGCGCAAC CGAGCGGCTG AAGCTGGTCG TGCCGGCGAC GCTGGCGGTC
ATCTTCGTGC TGCTCTACTT GCTGTTCAGG TCGTTCGGCG ACGCGGCGCT GGTGATGGCG
GCCGTGCCGT TCTCGCTGAT CGGCGGTTTC TGGCTGGTCT GGGCCATGGG CCACTCGGTC
TCCGTCGCCA CGGCGGTGGG CTTCATTGCG CTGGCCGGCG TGGCGGCCGA GTTTGGCGTG
GTGATGCTGG TCTACCTGAA GAACGCGCTG GCGCGGCGCC TGGCCGCCGG CGAGCCGATG
GACGACCAGA CCCTGCGCGC CGCCATCCGC GAAGGCGCCG TGCTGCGCGT GCGGCCCAAG
GCCATGACGG TGGCCGTCGT CATGGCGGGC CTGCTGCCCA TCCTCCTTGG CAGCGGCACC
GGCTCGGAAG TGATGACGCG CATTGCCGCG CCCATGGTGG GCGGCATGGT CACCGCGCCG
CTCTTGAGCA TGCTGGTGGT TCCGGCTGCG TGGTATTTGC TGTGTCGCCG AGGGGGTGCC
GTGAGACCCG ACAAGCAAAT ACACTAA
|
|---|
| Protein sequence | MIAALIRWSV GNRFLVLIAT LFLVAAGGWS VAHTPLDALP DLSDTQVIIR TPYPGKAPQV
VEDLVTYPLT TTMLSVPGAK TVRGYSFFGD SFVYVLFDDK TDPYWARSRV VEYLNQVQAR
LPAGASASLG PDATGVGWVY EYALVDRTGT RDIGQLRALN DWFLKFELKT VPDVAEVASI
GGMVRQYQVV LDPDRMRALG ITQAAVVEAL QKANQASGGS VVELAEAEYM VRSRGYLRSL
DDFRTIPLAV TGATPVLLRD VATVQIGPEM RRGIAELDGE GEVAGGVVVM RSGKNARTAI
EAVKAKLEAL KPGLPPGVEI VPTYDRSLLI DRAVQNLRSK LIEEFIVVAL VCAVFLFHLR
SALVAVVALP IGVLAAFIVM HWQGVNANIM SLGGIAIAIG AMVDGAIVMV ENVHKHIEAF
EAAQGRPPAV AERWRLVADA SVEVGPALFF SLLVITLSFV PVFSLEAQEG RLFSPLAFTK
TYAMAAAAGL SVTLIPVLMG YLVRGRIPHE ASNPVNRLLM AAYRPALELV LRFPKGTLFV
AAVLLALTAV PMMRLGGEFM PPLDEGDLLY MPSALPGLSV SKASQLLQQT DRLIKTVPEV
ERVFGKAGRA DTATDPAPLE MFETTIQFKP RAQWRAGMTA DRLVEELDRA VKVPGLSNVW
VPPIRNRIDM LATGIKSPVG IKVAGADLAT IDALTTQIEA AVKGVPGVSS ALAERLTGGR
YIDVDVDRLA TARHGLSVAD VQAVVSTAIG GDNVGEVIQG RERYPINLRY PREVRDSLDR
LRQLPFVTAR GAQLLLGDVA NIRIEDGPPM LRSENARLSG WVYVDVRGRD LRSAVTDMQA
SVGRAVKMPA GYAVSWSGQF EYLERATERL KLVVPATLAV IFVLLYLLFR SFGDAALVMA
AVPFSLIGGF WLVWAMGHSV SVATAVGFIA LAGVAAEFGV VMLVYLKNAL ARRLAAGEPM
DDQTLRAAIR EGAVLRVRPK AMTVAVVMAG LLPILLGSGT GSEVMTRIAA PMVGGMVTAP
LLSMLVVPAA WYLLCRRGGA VRPDKQIH
|
|---|
| |