| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6283 |
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| Symbol | |
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| ID | 7975499 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 1019833 |
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| End bp | 1021020 |
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| Gene Length | 1188 bp |
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| Protein Length | 395 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644796853 |
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| Product | nicotinate phosphoribosyltransferase |
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| Protein accession | YP_002948112 |
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| Protein GI | 239820927 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG1488] Nicotinic acid phosphoribosyltransferase |
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| TIGRFAM ID | [TIGR01514] nicotinate phosphoribosyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000174127 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAACCGA TCATCCAGAG CCTGCTCGAC ACCGACCTGT ACAAGTTCAC GATGTGGCAG
GCCATGCTGC ACAGCCACCC GCAGACGCAG GCCGAGTACA GCTTCGTGTG CCGCAACCAG
CCGGCCTATC CGCTGGCCGA GCTGCTGGCG GACGTCAACG CGCAGCTGGA CCACCTGTGC
ACGCTGCGCT TCGCGCCCGG CGAACTCGCC TACCTGCGCG GCCTGCGCTA CATCAAGAGC
GACTTCGTCG ACTTCCTGCG CATCTTCAGC TTCCAGCGCG AATTCATCAC CGCCGCGGCC
GAAGGCGATG CGCTGCGCAT CCGTGCGGTC GGCCCGCAGG TGCACACCAT GGCGTTCGAG
ATCTTCGTGC TCGCGATCGT CAACGAGCTG TACTTCCGCC GCTTCGATGC CGAGGCGGCG
CTGGCCGAGG GCCGCCGGCG CCTGCACGCC AAGATCGAAC TGCTGCGCGG TTTTGCGGAA
GAGCCGTCGG CGCGGCATCC ATTCGAGTTC TTCGACTTCG GCGTGCGGCG CCGCTTCTCC
CGCGACTGGC AGCGCGAAAT GGTCGGCACG CTCAAGCGCG AGGTGCCGAT GTATTTCAAG
GGCACCTCCA ACGTGCTGCT GGCCAAGGAG CTGGAGCTGG TGCCCATCGG CACCATGGCG
CACGAATACC TGCAGACCTA CCAGGCGCTC GGCGTGCGGC TGCGCGACTT CCAGAACGCT
GCGCTGGAAG GCTGGGTGCA GGAGTACCGC GGCGACCTGG GCGTGGCGCT GACCGACGTG
GTCGGCATGG ATGCCTTCCT GGCCGACTTC GACCTGTACT TCGCCAAGCT GTTCGACGGC
CTTCGCCACG ACTCGGGCGA TCCGGTCGCC TGGGGCGAGA AGGCGCTGGC GCACTACGCC
AGGCTGCGCA TCGATGCGCA CACCAAGCGG CTGGTGTTCT CCGACGGGCT CGACCTGCCA
ACGGCGATCC GGCTGTACCG CACCTTCGCC GACCGCACGC AGACCGGCTT CGGCATCGGC
ACCCACCTGA GCAACGACGT CGGCCTCACG CCGCTGAACA TCGTGATGAA GCTCACGGCC
TGCAACGGCC AGCCGGTGGC CAAGCTGTCG GACAGCCCGG GCAAGACGCT GTGCGAAGAC
CAGACCTTCC TGGCCTACCT GCGCCAGGTC TTTCAGATCG AGGGTTGA
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| Protein sequence | MQPIIQSLLD TDLYKFTMWQ AMLHSHPQTQ AEYSFVCRNQ PAYPLAELLA DVNAQLDHLC
TLRFAPGELA YLRGLRYIKS DFVDFLRIFS FQREFITAAA EGDALRIRAV GPQVHTMAFE
IFVLAIVNEL YFRRFDAEAA LAEGRRRLHA KIELLRGFAE EPSARHPFEF FDFGVRRRFS
RDWQREMVGT LKREVPMYFK GTSNVLLAKE LELVPIGTMA HEYLQTYQAL GVRLRDFQNA
ALEGWVQEYR GDLGVALTDV VGMDAFLADF DLYFAKLFDG LRHDSGDPVA WGEKALAHYA
RLRIDAHTKR LVFSDGLDLP TAIRLYRTFA DRTQTGFGIG THLSNDVGLT PLNIVMKLTA
CNGQPVAKLS DSPGKTLCED QTFLAYLRQV FQIEG
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