Gene Vapar_6280 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_6280 
Symbol 
ID7975496 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand
Start bp1017281 
End bp1017982 
Gene Length702 bp 
Protein Length233 aa 
Translation table11 
GC content70% 
IMG OID644796850 
Producttranscriptional regulator, GntR family 
Protein accessionYP_002948109 
Protein GI239820924 
COG category[K] Transcription 
COG ID[COG1802] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value6.8764e-07 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCCACCC CGCGCACCAC GACCCCACCC CCGGCTGCCT CGCCTGCGCT CTCGCGCACG 
GACGCGGCCT ATGAAAGCCT GCGCCGGCGC ATCCTCGACA ACATATGGCC GCCCGGCCAT
CAGGCGCTGG AGCAGGAGAT CGCGCTGGAA CTTGGCCTGA GCCGCACACC AGTGCGCGAA
GCGCTGATCC GGCTCGAGCG CGAAGGCCTG GTGCAGGTGA TCCCGCGCCA CGGTATGCGC
GTGCTGCCGA TGTCGGCCAC TGACATGCGC GAGATCTACG AGATCCTCAC CGCGCTCGAA
AGCCTGGCCG TCGAGATCGT GGCAACACGC CGCCCGTCGG ACTCCGAGCT GGCGCCGCTG
GTGCGCGCGA CGCAGGCGAT GGAACACGCA TTGGCCAAGG ACGATCTCGA CGCCTGGGCA
CGCGCCGACG AGAGCTTCCA TGCGCAGCTG GTCACCATGG CCGGCAACCG CCTGCTGACC
GAGGCCGTCT TCAGTCATTG GGACCGCGCG CACCGCGCCC GCATGTTCAC GCTGCGGCTG
CGGCCCAAGC CGGTGAATTC AACGCAGGAA CACACAGCGC TGGTGGAGTG CCTGCGCGCC
GGCGATTCGG CCGGCGCATC GGCAGTGAAC CGTGCCCACC GCCAGCGCGC GAGCCGCGAG
CTGCTGGCGC TGTTCGAGCG CTACCGCCTG CAGCAGATGT AG
 
Protein sequence
MPTPRTTTPP PAASPALSRT DAAYESLRRR ILDNIWPPGH QALEQEIALE LGLSRTPVRE 
ALIRLEREGL VQVIPRHGMR VLPMSATDMR EIYEILTALE SLAVEIVATR RPSDSELAPL
VRATQAMEHA LAKDDLDAWA RADESFHAQL VTMAGNRLLT EAVFSHWDRA HRARMFTLRL
RPKPVNSTQE HTALVECLRA GDSAGASAVN RAHRQRASRE LLALFERYRL QQM