| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6221 |
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| Symbol | |
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| ID | 7975437 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 951290 |
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| End bp | 952942 |
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| Gene Length | 1653 bp |
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| Protein Length | 550 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644796791 |
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| Product | AMP-dependent synthetase and ligase |
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| Protein accession | YP_002948050 |
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| Protein GI | 239820865 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGCGC AATCCTATGC AAAGGGGCTC GACCGCTGCG AGGCCAACCA TGTGCCGCTG
ACACCGCTCG GCTTTCTCGA GCGCGCCGCG CTGGCGCATC CGAACCGCGT GGCGGTGGTG
CACGGCGACT TGACGCGAAC CTGGGCGCAG ACGCGCGAGC GCTGCCATCG CCTGGCGTCG
GCGCTGGTCG CCAGGGGCGT CCAGCGGGGC GACACCGTGT CGGTGCTGGC GCCCAACACG
CCGGCCATGC TGGAGTCGCA CTTCGGCGTG CCGCTGGCAG GTGCCGTGCT CAACGCGATC
AACCATCGGC TGGACCCTGA AGGCATCGCG TTCATCCTGC GCCACGGCGA GTGCAAATTG
CTGATGGTGG ACCGCGAATT CGCCGCGACG GTTGCCGCCG CCCTGGAGCT GCTGGACAAC
CCTCCCGCGG TCATCGACAT CGAAGACCAT CTCGCACCGC CCGGCGAACG CATCGGCGAG
ACCGACTATG AATCGCTGCT GGCAAGCGGC GATCCGGCGT TCCCCGGCCG CTGGCCGAGC
GATGAGTGGC AGCCCATTGC GCTGAACTAC ACCTCGGGTA CGACGGGAGA CCCGAAGGGC
GTGGTCGCCA GCCACCGCGG CACCTACCTG ATGAGCCTGC TGCAGATCAC GAACTGGGCG
ATGCCGCGGG CGCCGAAGTA CCTGTGGACG CTGCCCATGT TCCACGCGAA CGGATGGTGC
TTCACCTGGG CTGTGACGGC GGCTGCCGGG ACCCACGTCT GCCTGCGCCG GGTGTCCGCC
GAAGCGGTGC TGGAGGCCAT CGACACGCAC CAGGTCGATC ATCTCTGCGC AGCGCCGGTC
GTGATGGCCA TGCTCTCGGA TTCGGCGCAG AACATCAGGC TGTCCCGCAG CGTGCGGGTA
CTGACCGCGG GTTCCCCGCC GCCGCTGGCC GTGCTGAACG CTGTGCTCGC GATGGGCTTC
GACGTGGAGC ATGTGTTCGG CATCACGGAG GTTTGCGGCA CGCCGGTGAG TTGCGCGTGG
CAGGACGGCT GGGACGATCT TGCACCCGCC GAGCAAGGCA AGCTGCGGGT GCGCCAGGGC
GTGCGCGCCG CCATGTTCGA GGGCCTCATG GTCGGCGATG CGGACACGCT GGCGCCGGTT
CCCCGCGACG GCACGACCGC GGGGGAGCTC ATGCTGCGCG GCAACACCGT GATGATGGGC
TACTTCAAGA ACGAGGCCGC GACGCGCAAG GCGCTCGCCA ACGGCTGGTT CCGCACCGGC
GACGTGGCGG TCCTGCATGG CAACGGCTAT GCGCAGATCA CCGACCGTTC GAAGGACGTG
ATCATTTCGG GCGGCGAGAA CATCTCTTCG GTGGAGGTCG AGGATGTCGT TCATGGGCAC
CCGGCCGTCC TGCATGCGGC CGTTGTGGCC CAGCCCGACG AGAGATGGGG CGAGGTGCCG
TGCGTGTTCA TCGAGCTCAG GGCAGGCGTT GCGGCGCCTT CCGAACAGGA GATCATTTCG
TTCTGCCGCG AGCGGCTGGC TCATTTCAAG TGTCCGCGCC GGGTGATCTT CACCCCCTTG
CCGAAGACCG CCACGGGAAA GATCCAGAAG TTCCGCCTGC GCGAGCAGGC CGGAAGCCGG
GAGGCCATCA CCGGCCTCGC GCGCCATGGT TGA
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| Protein sequence | MSAQSYAKGL DRCEANHVPL TPLGFLERAA LAHPNRVAVV HGDLTRTWAQ TRERCHRLAS
ALVARGVQRG DTVSVLAPNT PAMLESHFGV PLAGAVLNAI NHRLDPEGIA FILRHGECKL
LMVDREFAAT VAAALELLDN PPAVIDIEDH LAPPGERIGE TDYESLLASG DPAFPGRWPS
DEWQPIALNY TSGTTGDPKG VVASHRGTYL MSLLQITNWA MPRAPKYLWT LPMFHANGWC
FTWAVTAAAG THVCLRRVSA EAVLEAIDTH QVDHLCAAPV VMAMLSDSAQ NIRLSRSVRV
LTAGSPPPLA VLNAVLAMGF DVEHVFGITE VCGTPVSCAW QDGWDDLAPA EQGKLRVRQG
VRAAMFEGLM VGDADTLAPV PRDGTTAGEL MLRGNTVMMG YFKNEAATRK ALANGWFRTG
DVAVLHGNGY AQITDRSKDV IISGGENISS VEVEDVVHGH PAVLHAAVVA QPDERWGEVP
CVFIELRAGV AAPSEQEIIS FCRERLAHFK CPRRVIFTPL PKTATGKIQK FRLREQAGSR
EAITGLARHG
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