Gene Vapar_6214 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_6214 
Symbol 
ID7975430 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand
Start bp944467 
End bp945723 
Gene Length1257 bp 
Protein Length418 aa 
Translation table11 
GC content71% 
IMG OID644796784 
ProductL-carnitine dehydratase/bile acid-inducible protein F 
Protein accessionYP_002948043 
Protein GI239820858 
COG category[C] Energy production and conversion 
COG ID[COG1804] Predicted acyl-CoA transferases/carnitine dehydratase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.111664 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCATCCG ACGCTTTCAA ACACACCGCC GCCGCCGCCG AGCCCACGCC ACCGCCCGCC 
ACGCCGCAGG GGCCGCTCGC CGGCATCCGG ATCCTCGACA TGGCCACCGT GATCGCGGCG
CCCTTCTCGG CCTCGCTGTG CGCCGACATG GGCGCCGAGG TCGTCAAGCT GGAGCTGCCC
GAAGGCAACG ACCCGCTGCG CTCGCTCTCG CCCACCACGC CGGACCATGC GCTGTTCTGG
AAGGTCTCGA ACCGCGGCAA GAAGGGCGTG TCGCTCGACG TGCGCAAGCC GGAGGGCCGT
GCGCTGTTCC TGCGGCTGAT CGCGTCCTTC GATGTGCTGG TCGAGAACTT CCGCACCGGC
ACGCTCGACA AGTGGGGGCT CGACGCGCCC ACGCTGTGGT CGGTCAACCC CAGGCTCGTC
ATCCTGCGCG TCACCGGCTT CGGCCAGACC GGCCCGTATG CGCAGCGTCC GGGCTTCGCG
CGCATCTTCG AGGCGATGAG CGGCTTCGCC CACCTGACCG GCGAAAGCGG CCGCAGTCCG
CAGCACATGA ACTATCCGCT CGGCGACGTC ATCGCGGGCC TGTTCGGCGC CTTCGCCATC
TCCACCGCGA TCGCGGAACG CCATCGCCAT CCCGACGCAC CGGGCCGGGA GATCGACCTC
GCGGCGACCG AGGCCATGTT CCGGCTGCTC GAAGCGCTGC CGGTCGAGCA CGAGGTGCTG
GGGCAGGCGC GCAGCCGCTC GGGCAGCCGG GCCACCTACA CGGCACCCTC CAACATGTAC
CGCACGGCCG ACGGCCACTG GGTCACGATC GTGGGATCGT CCGACCCGAT CTTCAAGCGC
ATCTGCCAGG CCATGGGCCA GCCGGCGCTG GCGCACGACC CGCGCTTTGC GACCACGCCG
GACCGGGTGC AAAACATCGA CGAGATCGAT GCGATCGTCG CCGGCTGGTG CGAGTGCCAG
ACGCTGGCAG CGCTGTCCGA GGCCCTGACC CGCGGCGGCG TTCCCCACAG CAAGGTCTAT
GCGGTGGACG ACGTGATGGC CGATCCGCAC TTCATTGCGC GCGAAGCCAT CATCCGCTTG
CCCGATCCGG ACCTCGGGTC GCTGCCCGCG CCCGCGATCG TGCCGCGCTT CTCCGGCTTC
AAGCCCGCGC CGCCGCGCAC CGGGCCGGCG GCCGGCGAAC ACAACGCGGA GGTCTACGGT
GCGCTAGGCC TTGGCAGCGA TGCGCTGGAC CGGCTGCAGC GCGAGGGCGT GATCTGA
 
Protein sequence
MPSDAFKHTA AAAEPTPPPA TPQGPLAGIR ILDMATVIAA PFSASLCADM GAEVVKLELP 
EGNDPLRSLS PTTPDHALFW KVSNRGKKGV SLDVRKPEGR ALFLRLIASF DVLVENFRTG
TLDKWGLDAP TLWSVNPRLV ILRVTGFGQT GPYAQRPGFA RIFEAMSGFA HLTGESGRSP
QHMNYPLGDV IAGLFGAFAI STAIAERHRH PDAPGREIDL AATEAMFRLL EALPVEHEVL
GQARSRSGSR ATYTAPSNMY RTADGHWVTI VGSSDPIFKR ICQAMGQPAL AHDPRFATTP
DRVQNIDEID AIVAGWCECQ TLAALSEALT RGGVPHSKVY AVDDVMADPH FIAREAIIRL
PDPDLGSLPA PAIVPRFSGF KPAPPRTGPA AGEHNAEVYG ALGLGSDALD RLQREGVI