Gene Vapar_6206 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_6206 
Symbol 
ID7975096 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand
Start bp937006 
End bp937992 
Gene Length987 bp 
Protein Length328 aa 
Translation table11 
GC content66% 
IMG OID644796776 
Productquinone oxidoreductase, YhdH/YhfP family 
Protein accessionYP_002948035 
Protein GI239820850 
COG category[C] Energy production and conversion
[R] General function prediction only 
COG ID[COG0604] NADPH:quinone reductase and related Zn-dependent oxidoreductases 
TIGRFAM ID[TIGR02823] putative quinone oxidoreductase, YhdH/YhfP family 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.599678 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCTTCC AAGCACTGCT CGCCAGCAAG ACAGGCGACA AGATCACCAC CCGCGTGGTC 
TCGTTGAGCG AACAAGACCT CATGCCCGGG GACGTCGTGG TCGACGTCGA CTACTCCAAC
GTCAACTACA AGGACGCAAT GGCCATCACC GGCCGCGCGG AGGTCATCCG CCAGTTCCCG
TTGATTCCCG GCATCGACTT TGCCGGCACG GTCAGGACTT CTTCCTACCC TGGCATCGCT
GCTGGCGACC GCGTCGTCGC CAATGGCTGG GGCTTGAGCC AAACCCACCA CGGTGGCTAT
GCGCAGCAGG CGCGCGTGAA GGGCGAATGG CTGGTCAAGC TTCCGGCAGC CTTGTCCACC
AAGGACGCGA TGGCCATCGG AACGGCGGGG TACACGGCGA TGCTCTCCGT GCTGGCGCTC
GAGCACGGCG GGCTCACGCC CCAGCATGGC GACGTTCTCG TGACGGGCGC CAATGGCGGC
GTCGGTTCCA TCGCCATTGC CCTCTTGTCC GGTCTCGGCT ACCAGGTCGT TGCCTCCACA
GGGCGACTGG AGGAAGGCGG CTATCTGCGC AAGCTGGGGG CCGCCGAGAT CATCGATCGC
CGGACGCTGT CGGAGCCGGG GGCGCCGATC GCCCGCGAAA GATGGGCCGG TGCCGTCGAC
TCGGTCGGCA GCCACACACT GGCCAACGTG CTGGCGCAGA CAAAGTATCG AGGCGTGGTC
ACCGCTTGCG GCCTGGCCCA GGGCACCGAT CTTCCGGCCT CGGTGCTGCC ATTCATCCTG
CGCAATGTGA CGCTGGCCGG CATCGATTCG GTCAATGCGC CCCAACAGGT GCGCATCGAG
GCTTGGTCGC GGCTGGCGCG GGACCTGGAT CTGGACAAGC TCGCGCAAGC GACGCATGTG
GTCGGCCTTG CCGAGGTGCC TGCAGCCGTC GAGCGATTGT TCGCAGGAAA AGTCCAGGGC
CGTACGGTTG TCGACGTCAA CGCATGA
 
Protein sequence
MTFQALLASK TGDKITTRVV SLSEQDLMPG DVVVDVDYSN VNYKDAMAIT GRAEVIRQFP 
LIPGIDFAGT VRTSSYPGIA AGDRVVANGW GLSQTHHGGY AQQARVKGEW LVKLPAALST
KDAMAIGTAG YTAMLSVLAL EHGGLTPQHG DVLVTGANGG VGSIAIALLS GLGYQVVAST
GRLEEGGYLR KLGAAEIIDR RTLSEPGAPI ARERWAGAVD SVGSHTLANV LAQTKYRGVV
TACGLAQGTD LPASVLPFIL RNVTLAGIDS VNAPQQVRIE AWSRLARDLD LDKLAQATHV
VGLAEVPAAV ERLFAGKVQG RTVVDVNA