| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6181 |
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| Symbol | |
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| ID | 7975071 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 912076 |
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| End bp | 913689 |
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| Gene Length | 1614 bp |
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| Protein Length | 537 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644796751 |
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| Product | AMP-dependent synthetase and ligase |
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| Protein accession | YP_002948010 |
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| Protein GI | 239820825 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATCTCA GGCAAAGCCT GTACGAACGC TTCCGCCAAT CCGCGCAAGC ATTCGAAAAC
AACCCCTTCC TGGCCGTTCC CGCACGCTTG GCCGACGCAT GGGAGGTGCA ACGGGAACTC
CAGTTCGGTG AAGTCCTCGG CCGGGTCGAC GCGCTGAAGG CGCAGTATGC GGACCAGGGT
GTGGGCGAGG GAGACCGTGT GGCACTGGCC TTCGAGTCGC GGCCCGAGTT CGTCTTCCAC
TATCTGGCGC TCAACGCGCT GGGTGCCTGC GTGGTGCCGC TGAATACCGA CCTGACGGTC
GCCGAGCTGT CCTACCAGCT CGGGCACTCC GGCTGCGGTG CGGTGATCGG CCTGCCCGCG
CTGCAGCCAC TGCTCGCGGG TTCCATCGAA GCCTCGGGCC GCGCCATCCC GCTGAGCACG
AATGGTCCGC AGGGGCTGCG CCGCTTGCCG CGCCGCGGCA ATACGGCCGC GGTGCCAACC
GAACCCTTGG ACCGTGCGGC CGCCATCCTC TATACCTCAG GCACGACCGG CAGGCCCAAG
GGCTGCGTGC TGAGCAACGA CTACCTGCAG ACGGCGGCGG ACTATGCGCG CCAGCTGCCG
CCGCATCTGG CCTTTGCAGT CGGCTCGGAG CGGCAGATGA ATCCGCTGCC GCTCTATCAC
ATGAACGCGA TCAACACGCT GGGCACCGCC ATCGTGACGG GCTCCTGCTA TGTGATGCCG
GGACGGTTCA GCGCGACGCA CTGGTGGAAC GACATCGCCG ACACCGGAGC GACGCGCTTC
AAATATCTTG GAATCATGAT CCCGGCATTG CTGGGGCAAC CCGAAACCGA GCGCGACCGG
CACTCGGGTG TGAGCGTGGC GTTTGGCGCG GGCGTCGATC CGGTGCTCCA CGAGCGGTTC
GAAACGCGGT TCGGCATCCC GCTCATCGAG GTCTGGGGAA TGACGGAAAC CGGCCGCTTC
ATGTGCGTCG ACCGCGAGCC GCGCCAGATC CATACGCGGG CATGCGGCCG ACCGCTGCCG
GGGCTGCAGG CCCGCATCGT CGACGACGCG GGGCACGAAG TGGCCGACGG CACCGCAGGC
GAACTGGTGG TGCGCCACAC CGCAGAAAAC CCGCGCCAAG GCTTCTTCAG CGGCTACCTC
GACGACCCGG AGGCGACCGA AGCCGCGTGG GCCGGCGGCT GGTTCCACAG CGGCGACCTG
TGTACGCGTT CGACCGATGG CTTGTTCACC TTCGTCGACC GCAAGAAGAA CATCGTGCGA
CGCAGCGGCG AGAACATCTC CAGCGCGGAA GTCGAAGCCG TGCTGGCCGC CAGCCCGCTG
GTCAAGCAGG TCGCCGTGAT GGCGGTGCCC GACGATCTGC GCGACGAGGA GGTTCTTGCC
TGCGTGATTC CGGCCGCTGG GACGGCCCGC GACCATTCCC TGGCCATGGC GCTGCATCAG
TTTGCTGCGG AACGGCTTGC CTACTACAAG CCACCCGGCT GGATCTGCTT CGTCGACGAA
CTGCCGATCA CCGGCACGCA GAAGGTGCAG AAGCACCGCA TCTTCCCCGA CGGCTTTCGC
GCCGATCTTC CCGGCCTGCA CGACCTGCGC GACCAGAAGC GCTGGAAGAA GTGA
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| Protein sequence | MDLRQSLYER FRQSAQAFEN NPFLAVPARL ADAWEVQREL QFGEVLGRVD ALKAQYADQG
VGEGDRVALA FESRPEFVFH YLALNALGAC VVPLNTDLTV AELSYQLGHS GCGAVIGLPA
LQPLLAGSIE ASGRAIPLST NGPQGLRRLP RRGNTAAVPT EPLDRAAAIL YTSGTTGRPK
GCVLSNDYLQ TAADYARQLP PHLAFAVGSE RQMNPLPLYH MNAINTLGTA IVTGSCYVMP
GRFSATHWWN DIADTGATRF KYLGIMIPAL LGQPETERDR HSGVSVAFGA GVDPVLHERF
ETRFGIPLIE VWGMTETGRF MCVDREPRQI HTRACGRPLP GLQARIVDDA GHEVADGTAG
ELVVRHTAEN PRQGFFSGYL DDPEATEAAW AGGWFHSGDL CTRSTDGLFT FVDRKKNIVR
RSGENISSAE VEAVLAASPL VKQVAVMAVP DDLRDEEVLA CVIPAAGTAR DHSLAMALHQ
FAAERLAYYK PPGWICFVDE LPITGTQKVQ KHRIFPDGFR ADLPGLHDLR DQKRWKK
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