Gene Vapar_6148 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_6148 
Symbol 
ID7975024 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand
Start bp871264 
End bp872592 
Gene Length1329 bp 
Protein Length442 aa 
Translation table11 
GC content71% 
IMG OID644796703 
ProductMmgE/PrpD family protein 
Protein accessionYP_002947977 
Protein GI239820792 
COG category[R] General function prediction only 
COG ID[COG2079] Uncharacterized protein involved in propionate catabolism 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.984063 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCACGTCA CACAAACATT CGCGCGCTAC GCGGCCGACT TCCGGCGGCA GGATCTGCCG 
GCCGAGGTCC TCCATCACGC CAAGCGGGCC GTGATCGACT GGTACGCCTC GCTGTTCCCC
GGCCTCGGCG CGGCGCCGGT GCGCCAGCTC GAGGCCGCCC TGAACGAGGA CCTGGATCGC
GGACGCGCCT TTCTCGTCGG CGGTCGCCCG GCCACTGCGC GCGCCGCTGC GCTGATCAAC
GGCACGGCGG CCCATGCAGC GGAGGTGGAC GACAGCTTTC GCGAAGCCAT GTACCACCCG
GGCGCAGCCA CCATTGCCGC CGCGCTGGCC GCAAGCCATG ACGCCGGCGC AAGCGGGCTG
CAGTTCCTGC GCGGCGTGGT GCTGGGCTAT GAAGTGTCGA CGCGCATCGG CGTCGTGATG
GGCCGCGCGC ACTACCGGTT CTGGCACAGC ACGGGCACGG TGGGCAGCTT CGGCGCCGCG
GCCGCTGCAG GCGTTCTCAT GGACCTGGAC GAAGCCGCCT TCGCGCATGC GCTGGCCACG
GCCGCCACCT TCACGGCCGG CCTGCAGCAG GCCTTCCGCA TGGACTCCAT GTCCAAGCCG
CTGCATGCGG GCCGCGCGGC CGAGGCCGGC GTGCTCGCAG CCCAGCTCGC GCGCAACGGT
GTCACAGGCT CGCTCGACGT GCTCGAAGGA GAGGCCGGGC TGGGCCGGGC CATGAGCGAC
GGGCCGGACT GGTCGCAGAT CGGCGCGACG CTGGGGCGGG ACTTCCACAT CGCCCGCCTG
ACGTTCAAGA ACCACATCGG TTGCGGACAT GCCTTCGCGG CCATCGACGG CGCGCTGGCG
TTGAAGCGCC GGCATGGCAT CGAGGCCGGC GAGATCGCGC ATGTGCACGT GGCAACCTAC
CGCCCGGCGC TCGACATCGC CTGCTACACG CAGCCGGCCA CCGCCAACGA AGCGCGCTTC
AGCCTCGGCT ACGTGGTGGC GACCGCGCTG GCGCATGGCA GCGTGCGGCT GGCGGCGTAC
GAACCGGCGC GGCTGCAGGA CGCGGCCACG CGTTCATTGA TGGAGCGCAT CAGCGTTGCG
GTGGACCCCG AGCTCGATGC CGCCTTTCCG GGCCGGCGCG CCGCGCGCGT GCTGATCACG
ATGCACGACG GCCGCCGCTT CGAACACCTG CAGCCCAACC GCAAGGGCGA TCCGGAAGAG
CCGCTGAGCG ATGCCGAGCT CGAGGACAAG TTCATGGAAC TGTCCTCGCC CGTGATCGGC
AGCGCACCGG CGCGGGCGCT CTTGCACCGG CTCTGGACGC TGGAGCGCAG CGCGGCGGCG
CCGAGCTGA
 
Protein sequence
MHVTQTFARY AADFRRQDLP AEVLHHAKRA VIDWYASLFP GLGAAPVRQL EAALNEDLDR 
GRAFLVGGRP ATARAAALIN GTAAHAAEVD DSFREAMYHP GAATIAAALA ASHDAGASGL
QFLRGVVLGY EVSTRIGVVM GRAHYRFWHS TGTVGSFGAA AAAGVLMDLD EAAFAHALAT
AATFTAGLQQ AFRMDSMSKP LHAGRAAEAG VLAAQLARNG VTGSLDVLEG EAGLGRAMSD
GPDWSQIGAT LGRDFHIARL TFKNHIGCGH AFAAIDGALA LKRRHGIEAG EIAHVHVATY
RPALDIACYT QPATANEARF SLGYVVATAL AHGSVRLAAY EPARLQDAAT RSLMERISVA
VDPELDAAFP GRRAARVLIT MHDGRRFEHL QPNRKGDPEE PLSDAELEDK FMELSSPVIG
SAPARALLHR LWTLERSAAA PS