Gene Vapar_6076 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_6076 
Symbol 
ID7975522 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand+ 
Start bp796808 
End bp797452 
Gene Length645 bp 
Protein Length214 aa 
Translation table11 
GC content69% 
IMG OID644796632 
ProductFMN-binding negative transcriptional regulator 
Protein accessionYP_002947906 
Protein GI239820721 
COG category[K] Transcription 
COG ID[COG2808] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTACGTCT CCAAGCACCA CGCGCTGCCC GAGCCCGCCG AAGCCCAGGC ACTGATCGAG 
GCCCACCCGC TGGGCGCATG GGTCGTGCCC GGCCGCGAAG GCCTGGTCGC CAACCATGTG 
CCCTTCCTGC TGGACAGGTC GCGCGGCCCG TTCGGAACAC TGATGGGCCA TGTGTCGCGT 
GCCAATCCGG TGTGGAAGCT GCTGCCTGCC GCAGCGCATT CGGCGGTCAT GTTCCAGGGC 
CCGCAGTCCT ACATCACGCC CGGCTGGTAT CCGGGCAAAC AGGCGCACGG AAAGGTCGTG 
CCGACCTGGA ACTACGCGGT CGCCCATGCG CACGGCGCGG CGCGGGCCAT CGACGACGAA 
CACTGGCTGC GCGGCATGCT GACGCGCCTC ACGGCCGCCC ATGAGTCCTC GAAGCAATTG 
CCCTGGCAGA TGACGGACGC GCCGGCGGAT TTCATCGACA GGATGCTGCG TGCCGTGGTG 
GGCATCGAGA TTCCGATCGA GCGCTTGGTC GGCAAGCTCA AGGCGAGCCA GGACGAGGAC 
CTGCAGGACC GGTGGGGCAC CGTGAGCGGG CTGGCCGCCG AAGGCACCGA GAACGCGGCG 
GCGATGGCGC GCCTCGTCGA ACGTGCCGCC CGGCAACAGC GCTGA
 
Protein sequence
MYVSKHHALP EPAEAQALIE AHPLGAWVVP GREGLVANHV PFLLDRSRGP FGTLMGHVSR 
ANPVWKLLPA AAHSAVMFQG PQSYITPGWY PGKQAHGKVV PTWNYAVAHA HGAARAIDDE 
HWLRGMLTRL TAAHESSKQL PWQMTDAPAD FIDRMLRAVV GIEIPIERLV GKLKASQDED 
LQDRWGTVSG LAAEGTENAA AMARLVERAA RQQR