| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6069 |
|---|
| Symbol | |
|---|
| ID | 7975515 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | - |
|---|
| Start bp | 789728 |
|---|
| End bp | 790684 |
|---|
| Gene Length | 957 bp |
|---|
| Protein Length | 318 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644796626 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002947900 |
|---|
| Protein GI | 239820715 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3181] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTTAGCA AGCTGGCTGC CGTCCTGCTG GCATTCGTCG TTCCGTGCGC GGCCGCCCAG
GACTACCCGC ACAAGCCGGT GCGCCTGATC GTCCCGTTTC CTCCGGGCGG CAGCGTGGAT
CTGGTCGCGC GCCTGGTCGG CAAGAGCCTG CAGGACGCGC TGAAGCAGCC CTTCGTGGTC
GACAACAAGC CGGGTGCCTC CGGCAACGTC GGTGCCGCCT ACGTCGCCAA GGCGCCGCCG
GATGGCTACA CGCTGCTGGT CGGCAGCGCC GGTGTCTTTG CCGCCAACCA GTTCCTGTAT
GCCAATCCGC CATTCGATCC GCTGCAGGCC TTTGCGCCCA TCATGCGGAT CGTCGATCAG
CCCAACATCC TGGTCGTGGG CCAGCAGTCG CCCGTGCGCA GCGTCAACGA GTTGATCGCG
CTGGCCAAGG CACGCCCGGG AAAGCTGAGC TTCGGCAGCG CGAGCGTCGG TTCCGCCCAG
CACTTCTCTA CCGAGATCTT CATGCAGCAG GCCGGCGTGG AGCTCCTGCA CGTTCCCTAC
AAGGGAGGCG CGCCGGCGCT CGTGGATCTG ATGGGCGGGC AGATCGACAT GCTGTTCGAC
ACCTCGCCGA CGGCCTTGCC TTACGCCAGG AGCGGCAAGC TGCGTGCGCT GGCCATCACC
AGCCGACAGC GCTCGCCGCT GCTTCCGGAC GTTCCCACGA TGAAGGAAGC GGGGCTGCCC
GACTTCGAGG TCGTCACCTG GACCGGCATT GCCGCGCCGG CCGGCACACC CCAGGCCGTG
ATCGACAGGC TCAACGCCGC GATCAAGACC GCGCTGCGCG GCGAGTTGCG CAGGCAGCTC
GAGGAGACCT CCCTCATTCC GGTCGGGGAC TCGCCCGAAG CCTTCCGGGA GTTCATGCGC
AAGGACGCGG ACAGCTACGC GCGCCTCGTG AAGGCCGCCA AGATCACGCC CCAGTGA
|
|---|
| Protein sequence | MLSKLAAVLL AFVVPCAAAQ DYPHKPVRLI VPFPPGGSVD LVARLVGKSL QDALKQPFVV
DNKPGASGNV GAAYVAKAPP DGYTLLVGSA GVFAANQFLY ANPPFDPLQA FAPIMRIVDQ
PNILVVGQQS PVRSVNELIA LAKARPGKLS FGSASVGSAQ HFSTEIFMQQ AGVELLHVPY
KGGAPALVDL MGGQIDMLFD TSPTALPYAR SGKLRALAIT SRQRSPLLPD VPTMKEAGLP
DFEVVTWTGI AAPAGTPQAV IDRLNAAIKT ALRGELRRQL EETSLIPVGD SPEAFREFMR
KDADSYARLV KAAKITPQ
|
|---|
| |