| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6058 |
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| Symbol | |
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| ID | 7975343 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 778820 |
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| End bp | 780259 |
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| Gene Length | 1440 bp |
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| Protein Length | 479 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644796616 |
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| Product | amidohydrolase |
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| Protein accession | YP_002947890 |
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| Protein GI | 239820705 |
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| COG category | [F] Nucleotide transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0402] Cytosine deaminase and related metal-dependent hydrolases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.535728 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGTACGC TCATCGAGCA CCTTGAATTC GCCTTCCTCG TCGATGCCAA CGACACTGTG
TTGCGCAACG CCAGCATCCT GCTCGATGAC GACCGCATCG TCGACATCGG TCCGGCCGCC
GAGGTGGCGG CGCGACACCG AGGCGAGGCC TTCGACCGCG TCATGGACGG CCGCATGCTC
GGCATCTGCC CGGGCTTCGT CGACAGCCAT GTCCATCTGT CGGAGACGCT GTCTCGCGCC
GTGTTTCCGG ACAACTTGAA CACGCGAGCC TGGGTCTTCC ATTGGGCCAA GCCCTTCTAT
GCCCACATCA CCGAGGAGGA CGAGTATTGG GGCGCACTGC TCGGTATCAC CGAGATGCTG
CGCAACGGTA CGACCTGCTT CATCGACATG GGGTCGCAGT ACGACCCTGG AATCACAGTA
CGGGCGATGG AAAAGACCGG TATCCGCGGC GTGACAGGTC GCCACGCTGC GGACAACCCG
CCGCCCGAGC TGCCACGTGG TTGGACCGAA GAAATGGCGC GCCATCATTT CTTCCCCAGT
GCGGAAGCAG CGCTTGCGGA ACTCGAGGCC TGCGTTCGCA AGTACGACGG CGCACTCGAT
GGGCGGGTGC GGTGCTGGGT CAACATCGAG GGAAAAGAGC CGTGCACGCT CGAACTTCAC
GTCGGCGCGC AAAAGCTCGC CGAGCGGCTT GGCGTCGGCA CCACCTATCA CCTGGCGACC
TCGATCGAAG AGGCGAAGGT CTGCGAGGAA AAGTATGGCT GCTGGCCGAT CACGCGGATT
GACCGCGCGG GTGGTATCGG CTCCAACTTG GTGATCGCGC ACGGCGCCGC CGTGAGCGAC
GACGAGGTGG CGCTGCTGGC CAGTCGCGGC GCCAAGGTGG CGTTCTGCCC CTGCTCGTCG
TTCAAGCTCG GCAAGGGCGC GACGGCAATC GGCAAGTACC CGGAGATGGT TGCCGCCGGC
GTGACGGTGG GCCTTGGCAC CGACGGTGTG TCAGCGGCCG GCAACATGAA CCTGATGCGG
CAGATGCTGA TCGTTGCGGG CATGTTCAAG GACGCGCGCA TGAAGCCCGA TGTGTTCACG
GCCCGCCAGG CGCTCCGGGC GGCCACCATC GACGGCGCCA AGGCGGCGAT GTGGGATCAC
GACATCGGCT CGCTCGAAAT CGGGAAGAAG GCCGACTTCA TCCTGTTCGA CCTCGACCAC
ATCGAATGGA CGCCATTCCA CGATCCGCTG CAGGCGCTCG TCTTCTCGGC ATCCACCGCG
TCGATCTCGC AGACCTGGGT CGACGGCAAA ACGCTCTACA GCGACGGCAA GGTGCACGGC
GTCGACGAAC CCGCGCTGCG CCAAAAGGCC AGGGAGCTGG CTGCTGCGGC CGTCGAGCGG
GCCGGCCTGC ACGATGAAAA CGTCGAAACC ACCACCACGC TCTACGACAA CGGCAACTGA
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| Protein sequence | MRTLIEHLEF AFLVDANDTV LRNASILLDD DRIVDIGPAA EVAARHRGEA FDRVMDGRML
GICPGFVDSH VHLSETLSRA VFPDNLNTRA WVFHWAKPFY AHITEEDEYW GALLGITEML
RNGTTCFIDM GSQYDPGITV RAMEKTGIRG VTGRHAADNP PPELPRGWTE EMARHHFFPS
AEAALAELEA CVRKYDGALD GRVRCWVNIE GKEPCTLELH VGAQKLAERL GVGTTYHLAT
SIEEAKVCEE KYGCWPITRI DRAGGIGSNL VIAHGAAVSD DEVALLASRG AKVAFCPCSS
FKLGKGATAI GKYPEMVAAG VTVGLGTDGV SAAGNMNLMR QMLIVAGMFK DARMKPDVFT
ARQALRAATI DGAKAAMWDH DIGSLEIGKK ADFILFDLDH IEWTPFHDPL QALVFSASTA
SISQTWVDGK TLYSDGKVHG VDEPALRQKA RELAAAAVER AGLHDENVET TTTLYDNGN
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