Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_6045 |
Symbol | |
ID | 7975330 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012792 |
Strand | - |
Start bp | 768040 |
End bp | 769029 |
Gene Length | 990 bp |
Protein Length | 329 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 644796604 |
Product | isochorismatase hydrolase |
Protein accession | YP_002947878 |
Protein GI | 239820693 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG1335] Amidases related to nicotinamidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.406961 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGACCTCG ACAACCTCGA TCCAAAAACC TCGGCGCTGC TGGTCATCGA CCTGCAAAAC GCATTCATCC ACGACAAGGG CACGCTTGGA ATTTCAGGCG TCGACACACA GCGCCTGTCG GCGATCGTGC CGGTGCTTGC GGCTCTCATT CCGCGCTGCC AAGCCGCGGG CATTCCAGTG ATCTGGACCG TGCAGGAACA CTTCGCGGTC GACGCGAGCC GCGCGCACAA GAAGCTCGCG GGCCACACCT CGCGTCGCAA GCAGGTGTCG GCGCTCGCCG GCACCTGGGA CGAAGAGATC GTCGAAGAAT TGAAGCCTCT GGCGGCCGCC AATCCGGCCT ACGTGATCCG CAAGCATCGC TTTGGCGCCT TTTACGAAAC GCGCCTCGAG ATGATGCTCA AGATGCTGGG CACGCGCACG CTCTTCGTGG CCGGAACCAC TGCCAATGCA TGCGTCGAAA CCAGCATCCG TGAGGCCTAT CTGCGCGACT ACGACGTGGT GGCACTGAAC GACTGCATCT CGGGCGTCAA TGCAGAGTGG GAAGAGACGG CCAAGAAGGT CTGGAAGCAG TACTTCTGCG AGATTTCCGA TGCGGCGGAG ATGCGCGGCT GGATCGACGC GAAGTCCGCG CCTCGCACGC TGAGCTACGG CCACATGCTT CTGATGGTGC AGGACGTGCC GCGCTCGACC TCGTTCTACG TCGACCAACT CGGTTTCACG GTCCGACCCG CAAAGCCACT GGCTGATGGC CGGCCGTTCA CGGCCTTCCA TCAAGGTGTA GCCATCGTCG GCGGGCGGGC GCCTTCGCAC CGGCAGATCG ATCACATGGC ATTCGAGGTC AACGACGTGC GCGCACTGCG CGACAGGCTG AAGAAGGCGA ATATCGAGTT TCAAGAAGAC CTGCATGACG GACCGTACGG GCTGACCATT TACGTGACCG ATCCCGACGG CACGCGCGTC GAGCTGTACC AAGTAGGCGC GACCGCCTGA
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Protein sequence | MDLDNLDPKT SALLVIDLQN AFIHDKGTLG ISGVDTQRLS AIVPVLAALI PRCQAAGIPV IWTVQEHFAV DASRAHKKLA GHTSRRKQVS ALAGTWDEEI VEELKPLAAA NPAYVIRKHR FGAFYETRLE MMLKMLGTRT LFVAGTTANA CVETSIREAY LRDYDVVALN DCISGVNAEW EETAKKVWKQ YFCEISDAAE MRGWIDAKSA PRTLSYGHML LMVQDVPRST SFYVDQLGFT VRPAKPLADG RPFTAFHQGV AIVGGRAPSH RQIDHMAFEV NDVRALRDRL KKANIEFQED LHDGPYGLTI YVTDPDGTRV ELYQVGATA
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