| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5976 |
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| Symbol | |
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| ID | 7975015 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 703245 |
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| End bp | 704900 |
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| Gene Length | 1656 bp |
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| Protein Length | 551 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644796539 |
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| Product | AMP-dependent synthetase and ligase |
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| Protein accession | YP_002947813 |
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| Protein GI | 239820628 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.636472 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTGACG ACATACACCG GTTCCTCCCT GGACAGATGA TGAGCACCCC GTTGCTCATC
TCCGCCATCC TGCAGCGCGC CGACCGGTAT TTCGGCGATG TGGAGGTGGT GTCGCAGTTG
TCTTCCGGCG GCACGCATCG CTACACCTAT CGCGACTGTC ATCGTCGCGC GCGCCAGCTT
GCTGCAGCCA TGGTGACACA AGGCATGCGC ATGGGCGACC GCGTTGGCAC GCTTGCATGG
AACAGCTACC GGCACCTGGA GGCCTACTAC GCGGTGGCGG GTGCGGGCTC GGTGTTGCAC
ACGCTCAATC CGCGCCTGTT CCAGGAGCAG ATCGTCTACA TGGTCAACCA TGCGCAGGAC
GGTTGGCTCC TGTTCGATCC GGCCTTTGCC AGGCTCGTCC AGGCCATTGC ACCGCATTGT
CCGGGCGTGA AGGGATGGAT CGCGCTGTGC GGGCGCGACG AGATGCCGCA GATGGATGGC
ATGCCGGCGT TGCTGTGCTA CGAAGAGTTG CTGGACGCCA GTGCGGACAC CTACGAATGG
CCGCAGTTGG ATGAGAACGC CGCTTCGGGC CTGTGCTACA CATCGGGCAC AACGGGCGAT
CCCAAGGGTG TTCTCTACTC TCACCGATCC ACCGTCCTGC ATGCCATGTC GTCCTCGCTG
CCCGATTCTT TCGGGTTGTC GGCGCGGGAC GTGGTCTGCC CCGTCGTCCC GATGTTTCAC
GTCAACGCCT GGGGGTTGCC TTATGCGGCG GCGATGACCG GCGCGAAGCT TGTCCTTCCC
GGGGCGGCGC TGGACGGAGC CTCGGTGTAC GAGCTTTTCG AACGGGAGGG CGTGACCTTC
TCGGCGGGAG TGCCGACGGT GTGGATGGGC TTGCTCGACC ATGCCGCCAA GCAGGAAGCC
GGTTTCTCGA CCTTCAAGCG CACCGTGATC GGCGGCTCCG CGTGTCCCGC CGCGATGATG
AAGGTTTTCC GCGAGCGCTA CGGCATTGAG GTCGTCCATG CGTGGGGCAT GACCGAGACC
TCGCCGTTGG CCACCACCGG CAAGCTGTTC GCCAAGCACG ACAGCCTTCC CGAGGCAGAG
CGGCAGGCGA TCCTCGGCAA GCAAGGCACC ACCATCGTCG GTGTCGACAT CAAGATCGTC
GATGACGAAG GACGAGAACT GCCTTGGGAC GGCGAGACGG CGGGCAACCT GATGGCCAAG
GGTCCGTGGG TCGTCGAGCG TTACTTCCGC GACGCAGCGT CGGCGACGAA CGTCGATGGC
TGGTTCAACA CTGGCGACGT GGCCACCATC GATGCCGACG GCTACTTGAA GATTACCGAC
CGCAACAAGG ACGTGATCAA GTCCGGCGGC GAATGGATCA GCTCCATCGA ACTGGAGAAC
CTCGTGATGG CGCACCCGGC CGTGCAGCAG GCGGCCTGCA TCGGCGTCTA TCACCCCAAG
TGGGATGAAC GGCCTCTGCT TGTCGTCGTG AAAAGGCAAG GCGCCGCGCT GGAGAAAGAG
CAGCTGCTCG ATTTCCTCGA CGGCAAGGTT GCGAAATGGT GGCGGCCCGA CGAGGTGGCG
TTTGTCGAAT CGCTGCCGCT GGGTGCCACA GGCAAGGTGC TCAAGAACAA GCTCCGGGAC
CAGTTCCGGG CGTTTCGCTT GGTCGCGGAG GTCTGA
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| Protein sequence | MTDDIHRFLP GQMMSTPLLI SAILQRADRY FGDVEVVSQL SSGGTHRYTY RDCHRRARQL
AAAMVTQGMR MGDRVGTLAW NSYRHLEAYY AVAGAGSVLH TLNPRLFQEQ IVYMVNHAQD
GWLLFDPAFA RLVQAIAPHC PGVKGWIALC GRDEMPQMDG MPALLCYEEL LDASADTYEW
PQLDENAASG LCYTSGTTGD PKGVLYSHRS TVLHAMSSSL PDSFGLSARD VVCPVVPMFH
VNAWGLPYAA AMTGAKLVLP GAALDGASVY ELFEREGVTF SAGVPTVWMG LLDHAAKQEA
GFSTFKRTVI GGSACPAAMM KVFRERYGIE VVHAWGMTET SPLATTGKLF AKHDSLPEAE
RQAILGKQGT TIVGVDIKIV DDEGRELPWD GETAGNLMAK GPWVVERYFR DAASATNVDG
WFNTGDVATI DADGYLKITD RNKDVIKSGG EWISSIELEN LVMAHPAVQQ AACIGVYHPK
WDERPLLVVV KRQGAALEKE QLLDFLDGKV AKWWRPDEVA FVESLPLGAT GKVLKNKLRD
QFRAFRLVAE V
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