Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_5965 |
Symbol | |
ID | 7975004 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012792 |
Strand | - |
Start bp | 690335 |
End bp | 692128 |
Gene Length | 1794 bp |
Protein Length | 597 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 644796528 |
Product | 5-oxoprolinase (ATP-hydrolyzing) |
Protein accession | YP_002947802 |
Protein GI | 239820617 |
COG category | [E] Amino acid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0146] N-methylhydantoinase B/acetone carboxylase, alpha subunit |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.744958 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCACCC CCCAAACCCC AGCGGCCGCG GTCGACCCGG TCACCGTCGA GATCATTCGC AACGGCCTGT ACGCCGTGAC GGAGGAGATG AAGACCAATC TCACGCGCAC CGCCTACAAC CTGATCATCT ACGAGGCGCT GGACTTCACC GTCGGGCTCT TCACCAAGGA GGGCGACACG GTCTCGATCG GCTTGGGCCT GCCGATGTTC ATCCGCGGCA TGTCCGAGAC GGTGAAGGCG AAGATCAGGC ACTTCGGCTA CGAGAACATC CTGCCGGGCG ACATCCTGGT CACGAACGAC GCCTACACCA CCGGCAGCCA CCTGAACCAC TTCACGTTCA CGATGCCGGT GTTCCACGAG GGCAGGCTCG AAGGCTTCAC CTGCTGCATG GCGCACTGGC TCGACGTGGG CGGCACGCTC GGCAACGTCA CCACCGACAT CTTCAGCGAG GGGATCCAGA TCCCCATCAT GAAGTACCAG CGCGAAGGCG TCGTCAACCA GGACCTGATC GACATCATCG CGATGAACGT GCGGCTGGCC GATCGCGCCC TGGGCGACCT GCGCGCCCAG ATCACCGCGA TCACCACCGG CGAGCGCCGC TACGTGGAGC TGCTGCAGCG CTATGGCGTG GATGCAGTGA ACGGCTCGAT CCGCCAGATC ATGGACTCTT CAGAGGCCGT GGCGCGCAAG AACACCCTGT CGATTCCCGA TGGCGTGTAC GAGGCCGAGT CCTTCATGGA CGACGACGGA CTCGAGATTG GCAAGCGCAT CCCGATCCGC GTCAAGGTGA CCGTCACCGG TGATGAGATG ACGGTGGACC TGTCCGACGT CAGCAAGCAG GTTCGCGGCT TCTACAACTC GGGCTTCACC ACCGGCATCG CCTGCGCCCA GGTGGCCTAC AAGTGCCTGA CCACGCCGAC CGATTACCCG GTCAACGACG GAAGCTTTCG CTCGCTGAAG GTGATCATGC CGATGGGCAC GGTGATCAGT GCCGAGCGCC CGTACCCGAT GCGGGTGTGG ATGACCTTCC CGATGACGGT GATCGACACG ATCTTCAAGG CACTGGCGCC AGCCATTCCC GATCGCTCCA TCGCCGGCCA CCACGCCGAC TTGGTGTTTC CCAACATCCA CGGCATCTCG CCAGAGGACG GGCGGCTCTT CATCGTCGGC ATCGGGCCGC TGGGCGGAGG CTGGGGCGCG AAGTCGACGG AAGATGGCGT CTCGGTCACG GTCTGCATCA ACGACGGCGA CACCCACAAC AGCCCGACCG AGCAGCTCGA GGCCAAGTAC CCGGTGCTGG TCGAGAAGTA CCAGATCCGT CAGGACAGTG CCGGCGCCGG CCGGTACCGC GGCGGCCTGG GCGCGGAGAT GGTGGTGCAG GCGCTCTCGC CCTTCACCGT CACCACCCGC ATCGACCGTG TCCACTGCAA GCCATGGGGC CTGGAGGGCG GCGGAGACGC CATGGGCAAC GGCCTGGCCG TGCGGCACAA GGGCGAATGG AAGAGCGACC ACCTGAACGC AAAGATCTTC AACGTGCGGC TGGAACGCGG CGATGCCTAC AAGATGCTGT CGGGCGGCGG TGGCGGCTTC GGCGATCCGC TGGATCGGGA TATCGACCTG GTCGCAGAGG ACGTGCGCGA GGGCTACGTG AGCAGCGAGG TGGCGCGCCG GGTCTATCGC GTTGCGCTGG ACTCCAAAGG GCAGGTCGAC CAGGAGGCCA CGCGCACGCT CCGGAAGGCA CCGAGCGCCT TGCGCAATGG CGCCTCGCTC GACGTCGCCT GGGACGGGCA GTGA
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Protein sequence | MSTPQTPAAA VDPVTVEIIR NGLYAVTEEM KTNLTRTAYN LIIYEALDFT VGLFTKEGDT VSIGLGLPMF IRGMSETVKA KIRHFGYENI LPGDILVTND AYTTGSHLNH FTFTMPVFHE GRLEGFTCCM AHWLDVGGTL GNVTTDIFSE GIQIPIMKYQ REGVVNQDLI DIIAMNVRLA DRALGDLRAQ ITAITTGERR YVELLQRYGV DAVNGSIRQI MDSSEAVARK NTLSIPDGVY EAESFMDDDG LEIGKRIPIR VKVTVTGDEM TVDLSDVSKQ VRGFYNSGFT TGIACAQVAY KCLTTPTDYP VNDGSFRSLK VIMPMGTVIS AERPYPMRVW MTFPMTVIDT IFKALAPAIP DRSIAGHHAD LVFPNIHGIS PEDGRLFIVG IGPLGGGWGA KSTEDGVSVT VCINDGDTHN SPTEQLEAKY PVLVEKYQIR QDSAGAGRYR GGLGAEMVVQ ALSPFTVTTR IDRVHCKPWG LEGGGDAMGN GLAVRHKGEW KSDHLNAKIF NVRLERGDAY KMLSGGGGGF GDPLDRDIDL VAEDVREGYV SSEVARRVYR VALDSKGQVD QEATRTLRKA PSALRNGASL DVAWDGQ
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