| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5961 |
|---|
| Symbol | |
|---|
| ID | 7975000 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | - |
|---|
| Start bp | 686550 |
|---|
| End bp | 687830 |
|---|
| Gene Length | 1281 bp |
|---|
| Protein Length | 426 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 644796524 |
|---|
| Product | porin Gram-negative type |
|---|
| Protein accession | YP_002947798 |
|---|
| Protein GI | 239820613 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.116317 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACAGAA CCACGCTCGT GGCAGCGAGC CTGCTGTCCT GCGCCACCGC GGCGACCGCC
CAGTCGTCCG TCACACTCTT CGGCGTCGTC GACGTCGGCG TCAGCCACTA CAGCGCCAGG
AGCGACTTCT ACAACAACAC GGCGTCGCCC GCCATCGCAT CGCCGAGCGT CACCCGGAGC
CAGACGGCCT TGTCCAACAG CGGGACCTCC AACAGCCGCC TGGGCTTCCG CGGCACGGAG
GATCTCGGCG GTGGACTTGC CGCCGGCTTT TGGCTGGAAG CCGGCACGAC ACCGGACAAC
GGTGCCACCG CGATCGCAAG TTTCGCTCGC AGGTCCACCG TGAGCTTGTC GGGCCCTTTC
GGCGAGGTTC GGCTGGGCCG CGACTTCACC CCGACTTTCT GGAACGACTC GGTGTTCAGC
CCGTTCAGCA CGATCGGCGT CGGCGCCAAT GTCGTGTCGA GCGTGGGGAC CAACTTGCAG
ACAGTAAGAG GCCCTGGTTC CGCGGTAGCG GCCTCCGACA ACTATCTTCG CACCAGCAAC
AGCATCGGCT ACTTTCTTCC GCCCAATCTG GGTGGCGTCT ATGGTCAGTT CCAGTACGCC
TTGCACGAGA ACGTTTCGCA GAGCAGCCTG CCCGGAAGTC CAAGCCAGAA AGGGCGCTAC
TTCGGTGGTC GCCTGGGCTA TGCGGCCGGT CCGTTCGATG TCGCCTTGGC CTACGGGGAG
AGCACGGCAG CGGACACCAC CGGCGTGAGT CCCGTCGGAT TGCCAACCGG CGTCAATCTG
CGCGAGAAGA TCAAGACCAT CAATCTCGGC GCTTCGTACG ATTTCGGCTT CATGAAGATC
TTCGGTGAGC TCTCGCAGGT CAGGGACCAG GCGCTGTCGA GCGCGCCGGT GCCGGTGCTG
GGCTCCTTGA CGCTGCGTGA TTCGGACAAG TACAAGGGCG GTCTTGTGGG CATTACCGTG
CCCGTCGGTG CGGGGCTGAT CAAGGCGGCC TATTCACGCG TCAAGTTCGA CAACGATTTG
GGCCCGCTGG CGACCCCGCT GACACCGCGG CGTGATGCGT CGGTCAACAA GCTTGCGATC
GGGTTCGACT ACAACCTCTC CAAGCGCACG GCGCTGTATG CGACGGCAGC CCGGATCCGG
ATCAAGAACG GGCAGAACAA TCCGGCGATC ATGGGGGCTG TGACGGGTGG TGTGACGTAT
CTCACGACAG GCGCCGGAAT ATCGGGATTC GCCCCACGCA GTTCGACCGG ATACGACTTC
GGCATCCGGC ACGCGTTCTG A
|
|---|
| Protein sequence | MNRTTLVAAS LLSCATAATA QSSVTLFGVV DVGVSHYSAR SDFYNNTASP AIASPSVTRS
QTALSNSGTS NSRLGFRGTE DLGGGLAAGF WLEAGTTPDN GATAIASFAR RSTVSLSGPF
GEVRLGRDFT PTFWNDSVFS PFSTIGVGAN VVSSVGTNLQ TVRGPGSAVA ASDNYLRTSN
SIGYFLPPNL GGVYGQFQYA LHENVSQSSL PGSPSQKGRY FGGRLGYAAG PFDVALAYGE
STAADTTGVS PVGLPTGVNL REKIKTINLG ASYDFGFMKI FGELSQVRDQ ALSSAPVPVL
GSLTLRDSDK YKGGLVGITV PVGAGLIKAA YSRVKFDNDL GPLATPLTPR RDASVNKLAI
GFDYNLSKRT ALYATAARIR IKNGQNNPAI MGAVTGGVTY LTTGAGISGF APRSSTGYDF
GIRHAF
|
|---|
| |