| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5823 |
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| Symbol | |
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| ID | 7975874 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 528764 |
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| End bp | 530719 |
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| Gene Length | 1956 bp |
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| Protein Length | 651 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644796404 |
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| Product | TRAG family protein |
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| Protein accession | YP_002947678 |
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| Protein GI | 239820493 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCCTGG CACCAAGATA CGAAGGCTTG CCTAGTCCCT TCAGAATCGC GGTCGCGCTG
CTGATCGCGG CGCTGGTCGG CATGTACGTC GCCGGCCAAG CGTTCCTGTT CGCGATGAAT
CTGCCGCCAC AGCACGCCAC GCTGCTGACC CTTCACGAGT ACTGGCAGGC CTACGGCGAG
CGGCCGGACG TGCGCCGTGT CCTCATTGCG TCGCTGGTCG GCTCCCAGGG GCTGATGCTC
GGTCTGGTCG GAATTGCCAT GCTGCCCCGC CGCCGGCCGC TGCATGGAAA TGCCCGGTTT
GCGAGCCGTC GCGAGATCGC GCGATCGGGC CTCCTGAACG AGCACGGCAT CATCCTCGGG
CGGCTCGGCA ATCGCTACCT GGTGCTTCCC GGCCAGCAGG GCGTCGCACT CGAGGCACCG
CCGCGCAGTG GCAAGGGCGT CGGCGTGGTC ATCCCCAATC TGCTGAACTG GCCCGGCTCG
GCCATCATCA GCGACATCAA GGGCGAGAAC TTCATGCGCA CCGCCGGCTT CCGTGCGGCC
CATGGGCAGC AGGTGCACCT GTTCGATCCC CTGTCCGAGC GCGAGCGCTC GGCTCGCTGG
AATCCGCTCG GCTATGTCTC CGAGACGCCC TACCGCTGCA TCGACGATCT GCAGCGCATC
GGCACGATGC TCTTTCCCGA TCCACAGGCC GGCGATCCCT TCTGGACCTC CTCGGCCCGA
TCTCTATTCC TGGGCATTGC CCTCTATCTC TTCGAGACCA AAGGGGCCAC GCGCACCTTG
GGCGAGATCC TGCGCCAGGG CATGGCCAGC GATGCCGAGG GCTTTCAGAA ACACTGGAAG
CGTGTCATTG ATGCCTGCGA GCGCGCCGGG TATCCCTTGT CGCAGGAAGC GGTGCAGAGC
CTCTACGACG TGATCGACTT GGCACCGACC ACGGCCTCCA GCATCCGCAA GACCTTCACC
AGCCGCCTGG ACCTGTGGCT CAACCCGATG ATCGATGCGA CCACCTCGGC CAACGATTTC
GACCTGAGGG CACTGCGCAA GCATCCGATC TCGATCTATG TCCAGATCAA CCCCGACAAC
ATCGCCCGGC TGCAGCCGCT GCTGAACCTG TTCTTCCAGC AGGCGATCGG CCTGCAAACG
CGGGAACTCC CCGAGAACAA TCCCGAGCTT CGCCACCAGG TGCTCCTGAT GCTCGACGAA
TTTCCGGCGC TCGGGCGCAT TCCCGTCATC GCCGACTCCA CGGCCTTCCT GCCCGGCTAC
AACGTGCGCG CCGTAATCAT CGTCCAGTCC AATTCGCAAC TGATCGAGAA GTACGGTATC
GAGGGCGCCA AGTCGATCCG CAAGATGCTC GCGGCGCGCA TCGTGTTCCC ACCCAAGGAG
TACGAGGACG CCGAGGCCAT CTCGCGAGAG CTGGGGACCT ACACCGTCCG ACAGAAGAAC
ATCAGCCGCC CGATGTGGGG CGGTGCGAAC AAGGAGCCCA CCGTGACCAT CAGCGAGCAG
CCGCGCCGCC TGCTGCTGCC CCAGGAGGTC AAGGAACTGG GACCGGACCG GATGATCCTG
TTCTACGAAG GCCTGCGGCC GGTGCTGGCG CATCGGATCC TCTACTTTCG CGACAGGTTA
TTTGCCCCAC GCGAACTGCC GCCACCACTG GTGCCGAAGC TGAACGTCGA TAAGCCCGGC
GGCGCCGCCA CAACCGTGCC GGCGGCAATG CTCGATGACA GGAAAGACAC GTCCGGCACA
GGTCCCGGAT CCCTCTCCAA CGCCACGCCT CCGGACGGTG GCGCCGCGCC GACGGCCCGG
CAGGCCGCTG CCGTAGCCAG CAATGTATTG AACGACGACT TGAAGTTGGA CGACTTCTCG
TTCGACTTCG ACGACGTGGA GATTCCCACG GAGAAGCTCA GCGACGAGGA CCTGAAGCGC
CACGCCGATG AGTTCATGGC GCGAATCCTG GACTGA
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| Protein sequence | MTLAPRYEGL PSPFRIAVAL LIAALVGMYV AGQAFLFAMN LPPQHATLLT LHEYWQAYGE
RPDVRRVLIA SLVGSQGLML GLVGIAMLPR RRPLHGNARF ASRREIARSG LLNEHGIILG
RLGNRYLVLP GQQGVALEAP PRSGKGVGVV IPNLLNWPGS AIISDIKGEN FMRTAGFRAA
HGQQVHLFDP LSERERSARW NPLGYVSETP YRCIDDLQRI GTMLFPDPQA GDPFWTSSAR
SLFLGIALYL FETKGATRTL GEILRQGMAS DAEGFQKHWK RVIDACERAG YPLSQEAVQS
LYDVIDLAPT TASSIRKTFT SRLDLWLNPM IDATTSANDF DLRALRKHPI SIYVQINPDN
IARLQPLLNL FFQQAIGLQT RELPENNPEL RHQVLLMLDE FPALGRIPVI ADSTAFLPGY
NVRAVIIVQS NSQLIEKYGI EGAKSIRKML AARIVFPPKE YEDAEAISRE LGTYTVRQKN
ISRPMWGGAN KEPTVTISEQ PRRLLLPQEV KELGPDRMIL FYEGLRPVLA HRILYFRDRL
FAPRELPPPL VPKLNVDKPG GAATTVPAAM LDDRKDTSGT GPGSLSNATP PDGGAAPTAR
QAAAVASNVL NDDLKLDDFS FDFDDVEIPT EKLSDEDLKR HADEFMARIL D
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