| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5818 |
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| Symbol | |
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| ID | 7975020 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 523576 |
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| End bp | 524628 |
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| Gene Length | 1053 bp |
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| Protein Length | 350 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 644796399 |
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| Product | TrbL/VirB6 plasmid conjugal transfer protein |
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| Protein accession | YP_002947673 |
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| Protein GI | 239820488 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3704] Type IV secretory pathway, VirB6 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGATTCT TTGCGCAATT CTTTTCTTGG CTCGATAGCC AGCTTGCTGA CTACATCGGC
ACGCACTCAG CACGAGTTGC ATCCGCAATC GAACCCGCCG CCGTGACGCT CGCAGCCGTC
TACGTAATGA TCTGGGGTTA TCTCAGCCTT TCCGGACGAA TCCAAGAGCC GATGTGGGAG
GGAGTCAAGC GAATCTTCAC CGTGGCAATT GTTCTTGGCG CAGGACTTCG GCTGTGGACC
TACAACCAAG TCATTGCGGA TAGTTTCTAT CGAGCTCCTG AGCAATTGGC GGCGTCAGTC
ATTGGTGCGT CGACAGTCGT AAGTGTGATT GATCAGGTCT GGCTTGATGG AACGACAATC
GCTGAACAAT TGCTTAAGAA GGGAAGTGTG CTTGACAGTG ACTTTGCGTT CTACATCGCC
GGATTTCTGG TCTACCTGCT ACTCGGCCTA ACCGTCGTCG TAACCGCTTT CTTGCTTGGA
TTGTCAAAGG TCGCCGTTGC GATCTTGCTA GCCTTAGGCC CGATCTTCAT CGCCTTGCTA
TTTTTTGATG CAACGAAGCG ATTTTTTGAA TCCTGGATTG CACAACTAGC AAACTACGCA
CTTGTCGCGG TCCTCACTCT ATTCGCAGCG TCGCTACTTC TCAATATGGT AAGGGCCTAT
GCGGCTGGCG CCGCGGCGTC AGGCGCAGGG ATAACGATCG CGGCGAGTGT ACGGGTGTGC
GTTGCCTCAG CCCTCGTTTT CCTAGTGATG CGACAGGTTA CGTCAATCGC TGCGGGACTT
GCGAGCGGTG TTGCGCTGAG CACCTATAGC GTCGTCAGTG GAGCGCTCCG TTGGGGACTT
GGAAGCGCCA AGCGCACCAG CTACGAGTTC GGACGCGGCG TACTGGACGG CCTGCGGCGA
GAGCCGGGCA GCCGCTGGGA CTCGTTCCGC CGGCTCGCGG GCAATCGCAT CGGCGCGGGT
GTGGCCTCAA TTGCAAGTGT CGGCGCCACC CGCCGCGGTG GCACCGTGCT TTCCAGAGAG
CAGGTCATGC CGAGCCTCTC ACGCAGTCGC TAG
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| Protein sequence | MGFFAQFFSW LDSQLADYIG THSARVASAI EPAAVTLAAV YVMIWGYLSL SGRIQEPMWE
GVKRIFTVAI VLGAGLRLWT YNQVIADSFY RAPEQLAASV IGASTVVSVI DQVWLDGTTI
AEQLLKKGSV LDSDFAFYIA GFLVYLLLGL TVVVTAFLLG LSKVAVAILL ALGPIFIALL
FFDATKRFFE SWIAQLANYA LVAVLTLFAA SLLLNMVRAY AAGAAASGAG ITIAASVRVC
VASALVFLVM RQVTSIAAGL ASGVALSTYS VVSGALRWGL GSAKRTSYEF GRGVLDGLRR
EPGSRWDSFR RLAGNRIGAG VASIASVGAT RRGGTVLSRE QVMPSLSRSR
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