Gene Vapar_5742 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5742 
Symbol 
ID7974863 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand
Start bp448541 
End bp449248 
Gene Length708 bp 
Protein Length235 aa 
Translation table11 
GC content70% 
IMG OID644796323 
Product4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase 
Protein accessionYP_002947597 
Protein GI239820412 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0684] Demethylmenaquinone methyltransferase 
TIGRFAM ID[TIGR02798] 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.228064 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTTCTT TTTCTTCCAA CACCCTCCAG CAGATCGGCG TGGTCCATCG CAAGGTGGCG 
CGCGCGGATG CCGCCGCGGT CGACAAGCTC TCGCGCTTCG GCGTCTCGAC CGTGCACGAG
GCGCTCGGCC GGCTCGGGCT GATGCAGCCG CGCATCCGTC CGATCCATCC CGATGCGCGC
TTCTGCGGCC CGGCCGTCAC GGTGCTGCTG CAGCCCGGCG ACAACTGGAT GCTGCACGTG
GCGGCCGAGC AGATCCAGCC GGGCGACGTG GTGGTCGCGG CCTGCACCAG CGACAGCACC
GACGGCTTCT TCGGCGACCT GCTTGCCACC TCGTTCAAGG CGCGCGGCTG CAAGGGCCTG
GTGATCGACG GTGGCGTGCG CGACGTGCGC GACCTCAACG CGATGGGCTT TCCCGTGTTC
AGCCGCGCCA TCCATTCCAA GGGCACGATC AAGGCCACGC TCGGCTCGGT CAACGTGCCG
GTGGTGTGCG CCGGCGCGCT GGTGCATCCG GGCGATGTGG TGGTGGCCGA CATCGACGGC
GTGGTGGTGG TGCCGGCTGC GCGCGCGCAA GAGGTGGCCG ACGCCGCCGA AGCGCGCGAG
GCCAACGAGA CGGCCAAGCG CGCGCGCTTC GCGGCCGGCG AACTCGGCCT CGACATGTAC
GCCATGCGCG AGCCGCTGGC CAAGGCCGGC CTGCGCTACA TCGACTGA
 
Protein sequence
MSSFSSNTLQ QIGVVHRKVA RADAAAVDKL SRFGVSTVHE ALGRLGLMQP RIRPIHPDAR 
FCGPAVTVLL QPGDNWMLHV AAEQIQPGDV VVAACTSDST DGFFGDLLAT SFKARGCKGL
VIDGGVRDVR DLNAMGFPVF SRAIHSKGTI KATLGSVNVP VVCAGALVHP GDVVVADIDG
VVVVPAARAQ EVADAAEARE ANETAKRARF AAGELGLDMY AMREPLAKAG LRYID