Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_5742 |
Symbol | |
ID | 7974863 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012792 |
Strand | - |
Start bp | 448541 |
End bp | 449248 |
Gene Length | 708 bp |
Protein Length | 235 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644796323 |
Product | 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase |
Protein accession | YP_002947597 |
Protein GI | 239820412 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0684] Demethylmenaquinone methyltransferase |
TIGRFAM ID | [TIGR02798] 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.228064 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCTTCTT TTTCTTCCAA CACCCTCCAG CAGATCGGCG TGGTCCATCG CAAGGTGGCG CGCGCGGATG CCGCCGCGGT CGACAAGCTC TCGCGCTTCG GCGTCTCGAC CGTGCACGAG GCGCTCGGCC GGCTCGGGCT GATGCAGCCG CGCATCCGTC CGATCCATCC CGATGCGCGC TTCTGCGGCC CGGCCGTCAC GGTGCTGCTG CAGCCCGGCG ACAACTGGAT GCTGCACGTG GCGGCCGAGC AGATCCAGCC GGGCGACGTG GTGGTCGCGG CCTGCACCAG CGACAGCACC GACGGCTTCT TCGGCGACCT GCTTGCCACC TCGTTCAAGG CGCGCGGCTG CAAGGGCCTG GTGATCGACG GTGGCGTGCG CGACGTGCGC GACCTCAACG CGATGGGCTT TCCCGTGTTC AGCCGCGCCA TCCATTCCAA GGGCACGATC AAGGCCACGC TCGGCTCGGT CAACGTGCCG GTGGTGTGCG CCGGCGCGCT GGTGCATCCG GGCGATGTGG TGGTGGCCGA CATCGACGGC GTGGTGGTGG TGCCGGCTGC GCGCGCGCAA GAGGTGGCCG ACGCCGCCGA AGCGCGCGAG GCCAACGAGA CGGCCAAGCG CGCGCGCTTC GCGGCCGGCG AACTCGGCCT CGACATGTAC GCCATGCGCG AGCCGCTGGC CAAGGCCGGC CTGCGCTACA TCGACTGA
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Protein sequence | MSSFSSNTLQ QIGVVHRKVA RADAAAVDKL SRFGVSTVHE ALGRLGLMQP RIRPIHPDAR FCGPAVTVLL QPGDNWMLHV AAEQIQPGDV VVAACTSDST DGFFGDLLAT SFKARGCKGL VIDGGVRDVR DLNAMGFPVF SRAIHSKGTI KATLGSVNVP VVCAGALVHP GDVVVADIDG VVVVPAARAQ EVADAAEARE ANETAKRARF AAGELGLDMY AMREPLAKAG LRYID
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